RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CEP250Q9BV73 2442 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 MFSD2BA6NFX1 497 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 ZNF729A6NN14 1252 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 CYR61O00622 381 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 GAPDHP04406 335 aaKnown RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 HIST1H1BP16401 226 aaKnown RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 GPNMBQ14956 572 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 TRMT12Q53H54 448 aaKnown RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 VRK2Q86Y07 508 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 EMID1Q96A84 441 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 CDX1P47902 265 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 MRPL2Q5T653 305 aaKnown RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 GINS3Q9BRX5 216 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 NAGKQ9UJ70 344 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 EIF1BO60739 113 aaKnown RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 ELLP55199 621 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 POM121Q96HA1 1249 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 VN1R3Q9BXE9 311 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 PRDM7Q9NQW5 492 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 MTFP1Q9UDX5 166 aa11.53□□□□□ -0.56
COL6A3-203ENST00000353578 ATXN7L1Q9ULK2 861 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-203ENST00000353578 GABRA1P14867 456 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 ACVRL1P37023 503 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 FOXK1P85037 733 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 ZNF628Q5EBL2 1059 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 RPH3ALQ9UNE2 315 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 HEXAP06865 529 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 HAPLN1P10915 354 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-203ENST00000353578 ALOX5APP20292 161 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 GABRA4P48169 554 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 C11orf42Q8N5U0 333 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 TMEM231Q9H6L2 316 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 OR1A1Q9P1Q5 309 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 FAM198AQ9UFP1 575 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 CLEC2DQ9UHP7 191 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 RGPD2P0DJD1 1756 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 PKD1L3Q7Z443 1732 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 TRPM3Q9HCF6 1732 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-203ENST00000353578 ANK1P16157 1881 aa11.52□□□□□ -0.56
COL6A3-203ENST00000353578 TRAV27A0A087WT01 109 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 ZNF888P0CJ79 500 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 SLC25A4P12235 298 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 DHRS2Q13268 280 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 OR5M10Q6IEU7 315 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 GJC3Q8NFK1 279 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 CHST8Q9H2A9 424 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 A6NIN4 97 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 HSD17B6O14756 317 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 TCN2P20062 427 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 ZNF2Q9BSG1 426 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 SPANXDQ9BXN6 97 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 SIRPB1O00241 398 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 OR7C1O76099 320 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 FURINP09958 794 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 SLC35G1Q2M3R5 365 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 TCRBV5S2A0A599 114 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 NDUFB7P17568 137 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 OIT3Q8WWZ8 545 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 CPEB1Q9BZB8 566 aaKnown RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 DUSP11O75319 330 aaKnown RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 CTSOP43234 321 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 SLC36A2Q495M3 483 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 THNSL2Q86YJ6 484 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 ZNF595Q8IYB9 648 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 MBD3L1Q8WWY6 194 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 GOLGA2P5Q9HBQ8 144 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 FBXO45P0C2W1 286 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 FOXA1P55317 472 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 CDK5R1Q15078 307 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 SHHQ15465 462 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 CMTM4Q8IZR5 234 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 MMABQ96EY8 250 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-203ENST00000353578 IL17BQ9UHF5 180 aa11.52□□□□□ -0.57
COL6A3-203ENST00000353578 NECAP1Q8NC96 275 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 ELOVL1Q9BW60 279 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 ACER3Q9NUN7 267 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 USP3Q9Y6I4 520 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 TDRD15B5MCY1 1934 aaKnown RBP11.51□□□□□ -0.57
COL6A3-203ENST00000353578 NUDT3O95989 172 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 AREGP15514 252 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 SELEP16581 610 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 TNFRSF1BP20333 461 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 AOAHP28039 575 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 TEAD1P28347 426 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 EPHA2P29317 976 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 TMEM37Q8WXS4 190 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 PADI3Q9ULW8 664 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 EMC9Q9Y3B6 208 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 OR2M5A3KFT3 312 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 ZIC2O95409 532 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-203ENST00000353578 MAN2B1O00754 1011 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 RHBDL1O75783 438 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 EPHX3Q9H6B9 360 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 LDB2O43679 373 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 CAMKMTQ7Z624 323 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 EVX2Q03828 476 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 MARCH8Q5T0T0 291 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 RNASEKQ6P5S7 137 aaKnown RBP11.51□□□□□ -0.57
COL6A3-203ENST00000353578 OPN4Q9UHM6 478 aa11.51□□□□□ -0.57
COL6A3-203ENST00000353578 GCH1P30793 250 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms