RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 COMMD2Q86X83 199 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 GLTPQ9NZD2 209 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 A0A1B0GTI1 187 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 TP53I11O14683 189 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 PMS2P2O95744 297 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 CFIP05156 583 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 CSN2P05814 226 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 VSIG8P0DPA2 414 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 EIF1P41567 113 aaKnown RBP19.31■□□□□ 0.68
SHMT1-202ENST00000352886 GABREP78334 506 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 C3P1Q6ZMU1 363 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 HDDC2Q7Z4H3 204 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 CHST4Q8NCG5 386 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 UQCC2Q9BRT2 126 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 GSX2Q9BZM3 304 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 WDR54Q9H977 334 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 GPN3Q9UHW5 284 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF107Q9UII5 783 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-202ENST00000352886 HDGFL3Q9Y3E1 203 aa19.31■□□□□ 0.68
SHMT1-202ENST00000352886 SULT2B1O00204 365 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 RER1O15258 196 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 BPNT1O95861 308 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 QDPRP09417 244 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 QRFPP83859 136 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 ABHD12BQ7Z5M8 362 aaPredicted RBP19.3■□□□□ 0.68
SHMT1-202ENST00000352886 FJX1Q86VR8 437 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 COMMD7Q86VX2 200 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 CCDC28AQ8IWP9 274 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 SLC6A7Q99884 636 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 DHRS9Q9BPW9 319 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 MOB1AQ9H8S9 216 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 FXYD6-FXYD2A0A087WZ82 144 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF726A6NNF4 738 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 H3BUI4 141 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 SNAPC5O75971 98 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 RGS11O94810 467 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 CYC1P08574 325 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF20P17024 532 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 ADH6P28332 368 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 NKPD1Q17RQ9 610 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF529Q6P280 563 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 TRAPPC6BQ86SZ2 158 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 SOX7Q9BT81 388 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 FXYD6Q9H0Q3 95 aa19.3■□□□□ 0.68
SHMT1-202ENST00000352886 AQP7P3A6NL99 342 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 HMSDA8MTL9 139 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 ABOP16442 354 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF121P58317 390 aaPredicted RBP19.29■□□□□ 0.68
SHMT1-202ENST00000352886 IL11RAQ14626 422 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 MPPED2Q15777 294 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 ATPAF1Q5TC12 328 aaPredicted RBP19.29■□□□□ 0.68
SHMT1-202ENST00000352886 AWAT2Q6E213 333 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 NXT1Q9UKK6 140 aaKnown RBP19.29■□□□□ 0.68
SHMT1-202ENST00000352886 SLC5A6Q9Y289 635 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 LOC102723996A0A087X1L8 192 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 S100A11P31949 105 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF93P35789 620 aaPredicted RBP19.29■□□□□ 0.68
SHMT1-202ENST00000352886 HIST3H3Q16695 136 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 CDNFQ49AH0 187 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 CD163Q86VB7 1156 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 ANGPTL5Q86XS5 388 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 OR8B12Q8NGG6 310 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 OR13C8Q8NGS7 320 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 ZBTB8AQ96BR9 441 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 SPACA5Q96QH8 159 aa19.29■□□□□ 0.68
SHMT1-202ENST00000352886 IGHV1-45A0A0A0MS14 117 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 ANOS1P23352 680 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 RHOUQ7L0Q8 258 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 RNF144BQ7Z419 303 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 C12orf45Q8N5I9 185 aaPredicted RBP19.28■□□□□ 0.68
SHMT1-202ENST00000352886 GVQW1Q8N7I0 195 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 MAFAQ8NHW3 353 aaPredicted RBP19.28■□□□□ 0.68
SHMT1-202ENST00000352886 NUDCD2Q8WVJ2 157 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 PNRC2Q9NPJ4 139 aaKnown RBP19.28■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF319Q9P2F9 582 aa19.28■□□□□ 0.68
SHMT1-202ENST00000352886 CCDC163A0A0D9SF12 145 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 OR6C65A6NJZ3 312 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 SLC35A1P78382 337 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 ZNF239Q16600 458 aaKnown RBP19.27■□□□□ 0.68
SHMT1-202ENST00000352886 NHLRC3Q5JS37 347 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 SFRP5Q5T4F7 317 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 C17orf107Q6ZR85 190 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 TMPPEQ6ZT21 453 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 EDAQ92838 391 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 MR1Q95460 341 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 EDEM2Q9BV94 578 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 GPR84Q9NQS5 396 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 PTRH2Q9Y3E5 179 aaKnown RBP19.27■□□□□ 0.68
SHMT1-202ENST00000352886 NCOA6Q14686 2063 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-202ENST00000352886 KLK3P07288 261 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-202ENST00000352886 UMODP07911 640 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 GNB3P16520 340 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 CLDN17P56750 224 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 HLXQ14774 488 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-202ENST00000352886 MEF2DQ14814 521 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 RNASE10Q5GAN6 216 aaKnown RBP19.27■□□□□ 0.68
SHMT1-202ENST00000352886 OR52W1Q6IF63 320 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 FBXO4Q9UKT5 387 aa19.27■□□□□ 0.68
SHMT1-202ENST00000352886 DMDP11532 3685 aa19.26■□□□□ 0.67
SHMT1-202ENST00000352886 DISC1C4P0D8 188 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms