RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 DPPA3Q6W0C5 159 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 OR52E1Q8NGJ3 308 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 APOOQ9BUR5 198 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 GPR62Q9BZJ7 368 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 MTCH1Q9NZJ7 389 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 PRSS38A1L453 326 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 A6NIN4 97 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 PHOX2AO14813 284 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 FA2HQ7L5A8 372 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 HDAC8Q9BY41 377 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 NXF2Q9GZY0 626 aaKnown RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 TOX3O15405 576 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 XRCC2O43543 280 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 COL9A3Q14050 684 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 AMIGO3Q86WK7 504 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 GPR78Q96P69 363 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF768Q9H5H4 540 aaKnown RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 BCL2L10Q9HD36 194 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 A6NCN8 305 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 LRRC3CA6NJW4 275 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 FAM227AF5H4B4 570 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 RUNX3Q13761 415 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 PHLDA2Q53GA4 152 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 A0A087X0M5 115 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 A0A1B0GWA3 101 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 A0A1B0GX30 115 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 GALR2O43603 387 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 EPXP11678 715 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF343Q6P1L6 599 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 APCDD1Q8J025 514 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 PNPLA1Q8N8W4 532 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF275Q9NSD4 429 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 A0A1W2PPQ1 181 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 ALOX5APP20292 161 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 DSC1Q08554 894 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 TMEM88Q6PEY1 159 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 OR2A1Q8NGT9 310 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 OR10C1Q96KK4 312 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 UBE2ZQ9H832 354 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 KIAA1456Q9P272 454 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 AREGP15514 252 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 KIR2DS2P43631 304 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 GALR1P47211 349 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 ARG2P78540 354 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 HSPB8Q9UJY1 196 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 SPTAN1Q13813 2472 aaKnown RBP12.15□□□□□ -0.46
COL6A3-202ENST00000347401 DUXBA0A1W2PPF3 345 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 DBX1A6NMT0 343 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 DIO1P49895 249 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 ARFGAP1Q8N6T3 406 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 PLPP7Q8NBV4 271 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 TAAR9Q96RI9 348 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 AMBRA1Q9C0C7 1298 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF320A2RRD8 509 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 FRS3O43559 492 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 ARRB2P32121 409 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 IGFBP7Q16270 282 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 TRAT1Q6PIZ9 186 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 OR51F2Q8NH61 342 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 CD99L2Q8TCZ2 262 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF845Q96IR2 970 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-202ENST00000347401 NMNAT3Q96T66 252 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 EDEM2Q9BV94 578 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 UTS2O95399 124 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 KRTDAPP60985 99 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 BTG2P78543 158 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 CMBLQ96DG6 245 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 DSCR3O14972 297 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 ATP6V1FQ16864 119 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 B3GNT9Q6UX72 402 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 CLDND1Q9NY35 253 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 LDB3O75112 727 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 HRH1P35367 487 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 SQSTM1Q13501 440 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 GPRIN1Q7Z2K8 1008 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 OR2W3Q7Z3T1 314 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 OTX2P32243 289 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 CTF1Q16619 201 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 PDZD11Q5EBL8 140 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 MFSD12Q6NUT3 480 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF429Q86V71 674 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 SLC39A11Q8N1S5 342 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 NXPE3Q969Y0 559 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 GLIPR2Q9H4G4 154 aa12.15□□□□□ -0.46
COL6A3-202ENST00000347401 CASP8AP2Q9UKL3 1982 aa12.15□□□□□ -0.47
COL6A3-202ENST00000347401 PHF3Q92576 2039 aaKnown RBP12.15□□□□□ -0.47
COL6A3-202ENST00000347401 M0QYG6 137 aa12.15□□□□□ -0.47
COL6A3-202ENST00000347401 DUS4LO95620 317 aaKnown RBP12.15□□□□□ -0.47
COL6A3-202ENST00000347401 RPL11P62913 178 aaKnown RBP12.15□□□□□ -0.47
COL6A3-202ENST00000347401 KIAA1551Q9HCM1 1747 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 TARM1B6A8C7 271 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 SOCS6O14544 535 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 F13BP05160 661 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 ZNF66Q6ZN08 573 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 TMEM204Q9BSN7 226 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 GABRQQ9UN88 632 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 R4GMQ9 66 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 GREB1Q4ZG55 1949 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 J3KTA2 159 aa12.14□□□□□ -0.47
COL6A3-202ENST00000347401 PRICKLE3O43900 615 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms