RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 OCLNQ16625 522 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 SNAI3Q3KNW1 292 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC25A30Q5SVS4 291 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 MEDAGQ5VYS4 303 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 PRSS57Q6UWY2 283 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 KRT77Q7Z794 578 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 RFLNBQ8N5W9 214 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 GTF3AQ92664 365 aaKnown RBP13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 APOL4Q9BPW4 351 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 PLSCR5A0PG75 271 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF670-ZNF695F2Z2N8 137 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 PSMD9O00233 223 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 MPZL2O60487 215 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 F12P00748 615 aaPredicted RBP13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 APOC1P02654 83 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 MT-ND5P03915 603 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 GABRB1P18505 474 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 ANOS1P23352 680 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 TMED1Q13445 227 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 CLEC12BQ2HXU8 276 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 KCTD18Q6PI47 426 aaPredicted RBP13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 FBXW12Q6X9E4 464 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 RHOUQ7L0Q8 258 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 DHRSXQ8N5I4 330 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 ASB17Q8WXJ9 295 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 HAVCR1Q96D42 359 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 MNTQ99583 582 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 TBX5Q99593 518 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 BRD7Q9NPI1 651 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 CLN6Q9NWW5 311 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 PURGQ9UJV8 347 aaKnown RBP13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 LRP12Q9Y561 859 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 ITPR3Q14573 2671 aa13.58□□□□□ -0.24
CCDC28A-201ENST00000332797 C5orf63A6NC05 138 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 C17orf100A8MU93 164 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 PRR32B1ATL7 298 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 TBX1O43435 398 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 CLIC3O95833 236 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 RAC2P15153 192 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 KITLGP21583 273 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 MTNR1AP48039 350 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF81P51508 661 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 PRSS12P56730 875 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF121P58317 390 aaPredicted RBP13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 CXCR4P61073 352 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 IL5RAQ01344 420 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 TTC23Q5W5X9 447 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 OR2T2Q6IF00 324 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 TGIF2LYQ8IUE0 185 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 OR5AS1Q8N127 324 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF525Q8N782 197 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 OR10H4Q8NGA5 316 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 OR2AE1Q8NHA4 323 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 RHOXF1Q8NHV9 184 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 NRG4Q8WWG1 115 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 NEU4Q8WWR8 484 aaPredicted RBP13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 RNFT2Q96EX2 444 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 IKZF2Q9UKS7 526 aa13.57□□□□□ -0.24
CCDC28A-201ENST00000332797 ZSCAN5BA6NJL1 495 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 SNTNA6NMZ2 147 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 PHYHO14832 338 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 MMP15P51511 669 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 GK2Q14410 553 aaPredicted RBP13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 CARTPTQ16568 116 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 GLYATL3Q5SZD4 288 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF691Q5VV52 312 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF322Q6U7Q0 402 aaPredicted RBP13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 USP51Q70EK9 711 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 FAM57BQ71RH2 274 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 MRPL21Q7Z2W9 205 aaKnown RBP13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 PGAM5Q96HS1 289 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 Q96MT0 163 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 OR8B4Q96RC9 309 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 ADI1Q9BV57 179 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 MROQ9BYG7 248 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 NIPAL2Q9H841 368 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 SP140LQ9H930 580 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 MSL2Q9HCI7 577 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 CYSLTR2Q9NS75 346 aa13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 CGGBP1Q9UFW8 167 aaPredicted RBP13.56□□□□□ -0.24
CCDC28A-201ENST00000332797 TRIM64A6NGJ6 449 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 TRIM64BA6NI03 449 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 SPRY3O43610 288 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 OR2T7P0C7T2 308 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 MAGEB1P43366 347 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 PSMA6P60900 246 aaKnown RBP13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 ADARB1P78563 741 aaKnown RBP13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 ROM1Q03395 351 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF92Q03936 586 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF91Q05481 1191 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 TSTQ16762 297 aaKnown RBP13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 CLEC2AQ6UVW9 174 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 PGAP1Q75T13 922 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF679Q8IYX0 411 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 BHLHE23Q8NDY6 225 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 OR2T27Q8NH04 317 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 APH1BQ8WW43 257 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 A0A1W2PQL4 384 aaPredicted RBP13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 MAGEB4O15481 346 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms