RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PLCXD3Q63HM9 321 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 OGFOD3Q6PK18 319 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 BEND4Q6ZU67 534 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 HSD17B11Q8NBQ5 300 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 EMG1Q92979 244 aaKnown RBP13.26□□□□□ -0.29
TCOF1-201ENST00000323668 ZFP64Q9NPA5 681 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 SLC22A11Q9NSA0 550 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 KLHL13Q9P2N7 655 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 ZMIZ1Q9ULJ6 1067 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 LINC01565O15544 149 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 TXNL1O43396 289 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 EIF1BO60739 113 aaKnown RBP13.26□□□□□ -0.29
TCOF1-201ENST00000323668 TBX6O95947 436 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-201ENST00000323668 CD80P33681 288 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 MESTQ5EB52 335 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 GPR157Q5UAW9 335 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 MOB3CQ70IA8 216 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 OR2W3Q7Z3T1 314 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 ARRDC1Q8N5I2 433 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 LRRC61Q9BV99 259 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 C12orf10Q9HB07 376 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 CA10Q9NS85 328 aa13.26□□□□□ -0.29
TCOF1-201ENST00000323668 A0A1W2PNR3 127 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 NRG2O14511 850 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 JTBO76095 146 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 HTR5AP47898 357 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PPP1R1AQ13522 171 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PCK2Q16822 640 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 DEGS2Q6QHC5 323 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 OR5M9Q8NGP3 310 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 OR6K3Q8NGY3 331 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 OR1S1Q8NH92 325 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 TM4SF19Q96DZ7 209 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 B4GALT7Q9UBV7 327 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 ABCD3P28288 659 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 SRSF5Q13243 272 aaKnown RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 SHHQ15465 462 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 SMUG1Q53HV7 270 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 MRPL21Q7Z2W9 205 aaKnown RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 FAM213BQ8TBF2 198 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 C11orf40Q8WZ69 217 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PCDHB10Q9UN67 800 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PIGLQ9Y2B2 252 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 ALG1L2C9J202 215 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 K7EQS6 105 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 KLF4O43474 513 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 TMIGD3P0DMS9 266 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 CT45A8P0DMV1 189 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 CT45A9P0DMV2 189 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF133P52736 654 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 CT45A2Q5DJT8 189 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 SOHLH1Q5JUK2 328 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 ZPLD1Q8TCW7 415 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 GLYATL2Q8WU03 294 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 NINJ1Q92982 152 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 KCNE5Q9UJ90 142 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 GDF2Q9UK05 429 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 TMEM184BQ9Y519 407 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PUS1Q9Y606 427 aaKnown RBP eCLIP13.25□□□□□ -0.29
TCOF1-201ENST00000323668 OTX2P32243 289 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 CD96P40200 585 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PCBD1P61457 104 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 C1QL3Q5VWW1 255 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 UQCC3Q6UW78 93 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 CRIPAKQ8N1N5 446 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 C2orf50Q96LR7 162 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 DUSP23Q9BVJ7 150 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 KCNK15Q9H427 330 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 PCDHGA5Q9Y5G8 931 aa13.25□□□□□ -0.29
TCOF1-201ENST00000323668 TCRBV16S1A1N1A0A5B0 115 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 KIR2DL1P43626 348 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 FMODQ06828 376 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 ARHGEF39Q8N4T4 335 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 OR1N1Q8NGS0 311 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 CMBLQ96DG6 245 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 CFHR5Q9BXR6 569 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 TMPRSS13Q9BYE2 586 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 RPS10-NUDT3A0A1W2PQS6 291 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 EPHA1P21709 976 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 OMGP23515 440 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 S100PP25815 95 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 RPS10P46783 165 aaKnown RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF674Q2M3X9 581 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 MKXQ8IYA7 352 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 BVESQ8NE79 360 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 OR5M8Q8NGP6 311 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 NMNAT2Q9BZQ4 307 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 KPTNQ9Y664 436 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 CCDC85CA6NKD9 419 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 THY1P04216 161 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 CELA2BP08218 269 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 S100A12P80511 92 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 FZD2Q14332 565 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 TMEM71Q6P5X7 295 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 FAM199XQ6PEV8 388 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF100Q8IYN0 542 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 LGI3Q8N145 548 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 OR51A4Q8NGJ6 313 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 OIT3Q8WWZ8 545 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms