RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZNF775Q96BV0 537 aaPredicted RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 JAM3Q9BX67 310 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 S1PR5Q9H228 398 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 SLCO1C1Q9NYB5 712 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 ZNF346Q9UL40 294 aaKnown RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 A0A0A6YYD5 115 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 OPN5Q6U736 354 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 NUBPLQ8TB37 319 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 EMC6Q9BV81 110 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 SIRT3Q9NTG7 399 aaPredicted RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 LOC105371267A0A1B0GV96 52 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 ANKRD20A5PA0PJZ0 165 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 FAM74A7A6NL05 159 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 C9J4A7 227 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 EML2O95834 649 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 H2AFB1P0C5Y9 115 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 FOLR1P15328 257 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 CXCL2P19875 107 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 ZNF74Q16587 644 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 FAM74A3Q4VXF1 159 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 RPUSD3Q6P087 351 aaKnown RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 OR1J1Q8NGS3 322 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 ISOC2Q96AB3 205 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 CRLF2Q9HC73 371 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 DHCR7Q9UBM7 475 aaKnown RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 RARRES3Q9UL19 164 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 SIRT4Q9Y6E7 314 aaPredicted RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 CACNA1DQ01668 2161 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 TRAV36DV7A0A075B6V5 113 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 SLC17A2O00624 439 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 BHLHE40O14503 412 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 XRCC2O43543 280 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 GCM2O75603 506 aaPredicted RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 UTS2O95399 124 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 CELA2BP08218 269 aaPredicted RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 CASRP41180 1078 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 PPP1R1AQ13522 171 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 ZNF266Q14584 549 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 OR14A16Q8NHC5 309 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 PIGTQ969N2 578 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 SPTSSAQ969W0 71 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 PAPOLGQ9BWT3 736 aaKnown RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 HINT2Q9BX68 163 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 PRDM7Q9NQW5 492 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 CUTCQ9NTM9 273 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 MIOXQ9UGB7 285 aa13.88□□□□□ -0.19
SHH-201ENST00000297261 NXT1Q9UKK6 140 aaKnown RBP13.88□□□□□ -0.19
SHH-201ENST00000297261 MALLQ13021 153 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 CLEC12BQ2HXU8 276 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 PWWP2BQ6NUJ5 590 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 TMEM123Q8N131 208 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 GPR137CQ8N3F9 429 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 PRSS35Q8N3Z0 413 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR5M8Q8NGP6 311 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 KIRREL1Q96J84 757 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 AP1S3Q96PC3 154 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 TMED7-TICAM2A0A0A6YYA0 188 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 TP53I11O14683 189 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 ST8SIA3O43173 380 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 F12P00748 615 aaPredicted RBP13.87□□□□□ -0.19
SHH-201ENST00000297261 HBE1P02100 147 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 CRYBA1P05813 215 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 CPN1P15169 458 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 FASLGP48023 281 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 BIDP55957 195 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 TLE4Q04727 773 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 ACKR1Q16570 336 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 RNLSQ5VYX0 342 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 ZNF611Q8N823 705 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR51A4Q8NGJ6 313 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR5L1Q8NGL2 311 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR10D4PQ8NGN7 298 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR13C8Q8NGS7 320 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR14L1PQ8NHC6 308 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 PTP4A1Q93096 173 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 LPAR4Q99677 370 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 LRRC61Q9BV99 259 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 TMED7Q9Y3B3 224 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 SVILO95425 2214 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 FRMPD3Q5JV73 1810 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 SULT2B1O00204 365 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 TAAR5O14804 337 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 HCRTR1O43613 425 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 OR1D5P58170 312 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 DMKNQ6E0U4 476 aaPredicted RBP13.87□□□□□ -0.19
SHH-201ENST00000297261 HGDQ93099 445 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 MED9Q9NWA0 146 aa13.87□□□□□ -0.19
SHH-201ENST00000297261 SPP1P10451 314 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 EMDP50402 254 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 TMPRSS11FQ6ZWK6 438 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 TLCD2A6NGC4 264 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 ZNF587BE7ETH6 402 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 MPC2O95563 127 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 TK1P04183 234 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 ANKRD34CP0C6C1 535 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 FZD2Q14332 565 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 DEFB123Q8N688 67 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 OR6K3Q8NGY3 331 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 A0A1W2PPV9 198 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 C2orf72A6NCS6 295 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms