RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ST6GALNAC5Q9BVH7 336 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 PRMT8Q9NR22 394 aaPredicted RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 R4GMQ9 66 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 FAM186AA6NE01 2351 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 A0A1W2PPC4 97 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 PLPP3O14495 311 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 AGPAT2O15120 278 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 FGF2P09038 288 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 PGAM2P15259 253 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 ABOP16442 354 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 HOXA1P49639 335 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 S100A10P60903 97 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 HAGHLQ6PII5 290 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 ABHD12BQ7Z5M8 362 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 ZSCAN1Q8NBB4 408 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 OR51E1Q8TCB6 317 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 ZNF721Q8TF20 911 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 PRRT1Q99946 306 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 WWTR1Q9GZV5 400 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 LANCL2Q9NS86 450 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 CTSFQ9UBX1 484 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 GDF2Q9UK05 429 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 IGLV1-36A0A0B4J1U3 117 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 TLCD2A6NGC4 264 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 A8MXK9 166 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 DDAH2O95865 285 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 CDAP32320 146 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 SFTPDP35247 375 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 SLC26A5P58743 744 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 AIMP2Q13155 320 aaKnown RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 SNTB1Q13884 538 aaKnown RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 ELAVL1Q15717 326 aaKnown RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 DNM1P34Q6PK57 102 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 ARL6IP6Q8N6S5 226 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 OR5M8Q8NGP6 311 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 TMED6Q8WW62 240 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 FAM131CQ96AQ9 280 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 CCNL2Q96S94 520 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 CDCA3Q99618 268 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 UTP23Q9BRU9 249 aaKnown RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 DUSP15Q9H1R2 295 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 VSX1Q9NZR4 365 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 CLEC1BQ9P126 229 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 CUL9Q8IWT3 2517 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 ZNF705EA8MWA4 302 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 SDCBPO00560 298 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 OR2T1O43869 369 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 AQP8O94778 261 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 HPP00738 406 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 F12P00748 615 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 SERPINF1P36955 418 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 CSNK1EP49674 416 aaKnown RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 OVCH2Q7RTZ1 564 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 GRINAQ7Z429 371 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 ROBO4Q8WZ75 1007 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 ADIPOR1Q96A54 375 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 FOXRED1Q96CU9 486 aaPredicted RBP11.3□□□□□ -0.6
LIG1-201ENST00000263274 NICN1Q9BSH3 213 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 PCDHB10Q9UN67 800 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 CSAG2Q9Y5P2 127 aa11.3□□□□□ -0.6
LIG1-201ENST00000263274 WDFY4Q6ZS81 3184 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 DNASE2O00115 360 aaPredicted RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 GPR31O00270 319 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 MT-ATP6P00846 226 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 S100A9P06702 114 aaKnown RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 SFTPBP07988 381 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 CD38P28907 300 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 TSPAN7P41732 249 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 OR3A2P47893 321 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 BLOC1S1P78537 153 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 SLC16A13Q7RTY0 426 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 HSD17B13Q7Z5P4 300 aaPredicted RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 OR2I1PQ8NGU4 316 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 OR2AJ1Q8NGZ0 328 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 OR4K15Q8NH41 348 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 C8orf44Q96CB5 159 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 MRPL38Q96DV4 380 aaKnown RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 ADAT3Q96EY9 351 aaPredicted RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 WBP1Q96G27 269 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 CYYR1Q96J86 154 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 CHMP1AQ9HD42 196 aaPredicted RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 A0A1W2PP11 408 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 NDUFS6O75380 124 aaKnown RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 FARS2O95363 451 aaKnown RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 CBR1P16152 277 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 PVALBP20472 110 aaPredicted RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 CNR1P21554 472 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 FAM69BQ5VUD6 431 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 RNF144BQ7Z419 303 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 LYG2Q86SG7 212 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 TMEM200AQ86VY9 491 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 OR1L3Q8NH93 324 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 INTS12Q96CB8 462 aaKnown RBP11.29□□□□□ -0.6
LIG1-201ENST00000263274 SLAMF6Q96DU3 332 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 SLC25A32Q9H2D1 315 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 GAREM1Q9H706 876 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 ACKR4Q9NPB9 350 aa11.29□□□□□ -0.6
LIG1-201ENST00000263274 A0A1W2PNR3 127 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 OR6C65A6NJZ3 312 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ALG1L2C9J202 215 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 145.8 ms