RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DRAM2Q6UX65 266 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 FOXRED2Q8IWF2 684 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 PXT1Q8NFP0 134 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 HDHD3Q9BSH5 251 aaPredicted RBP9.49□□□□□ -0.89
USP28-201ENST00000003302 RNF126Q9BV68 326 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 EDEM2Q9BV94 578 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 FAM206AQ9NX38 181 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 TAS2R3Q9NYW6 316 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 SHPKQ9UHJ6 478 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 PLCL2Q9UPR0 1127 aa9.49□□□□□ -0.89
USP28-201ENST00000003302 ASH1LQ9NR48 2969 aaKnown RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 EFSO43281 561 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 RPA2P15927 270 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 CD34P28906 385 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 BIDP55957 195 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 MICBQ29980 383 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 OR4A4PQ8NGN8 299 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 TMED6Q8WW62 240 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 ZNF837Q96EG3 531 aaPredicted RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 CPNE2Q96FN4 548 aaPredicted RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 SLC46A1Q96NT5 459 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 LDAHQ9H6V9 325 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 IGHV1OR15-9A0A0B4J2B8 117 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 IGKV1-9A0A0C4DH69 117 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 C9orf170A2RU37 121 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 G3V3Y1 287 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 SULT1C2O00338 296 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 CALCRP30988 508 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 PPIAP62937 165 aaKnown RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 SUPT4H1P63272 117 aaKnown RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 C11orf87Q6NUJ2 197 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 EID2Q8N6I1 236 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 TLNRD1Q9H1K6 362 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 ASF1BQ9NVP2 202 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 VSX1Q9NZR4 365 aaPredicted RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 LHFPL6Q9Y693 200 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 ARHGAP21Q5T5U3 1957 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 STK17BO94768 372 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 CASRP41180 1078 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 TDGQ13569 410 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 ZNF169Q14929 603 aaPredicted RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 C14orf28Q4W4Y0 310 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 TMEM71Q6P5X7 295 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 PLXDC2Q6UX71 529 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 MAMDC2Q7Z304 686 aaPredicted RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 ADGRE4PQ86SQ3 457 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 ANGPTL5Q86XS5 388 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 AQP3Q92482 292 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 ZBTB8AQ96BR9 441 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 FAM71F1Q96KD3 344 aaPredicted RBP9.48□□□□□ -0.89
USP28-201ENST00000003302 OR10C1Q96KK4 312 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 SEC61A2Q9H9S3 476 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 EMC3Q9P0I2 261 aa9.48□□□□□ -0.89
USP28-201ENST00000003302 IGHV3-15A0A0B4J1V0 119 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 DLSTP36957 453 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 TAS2R19P59542 299 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 IL13RA1P78552 427 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 KCNK17Q96T54 332 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 ZNF768Q9H5H4 540 aaKnown RBP9.47□□□□□ -0.89
USP28-201ENST00000003302 C5orf66Q9H5L9 145 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 DZANK1Q9NVP4 752 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 CEP192Q8TEP8 1941 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 DNASE1L1P49184 302 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 NOVA1P51513 510 aaKnown RBP9.47□□□□□ -0.89
USP28-201ENST00000003302 ELOCQ15369 112 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 FDX2Q6P4F2 183 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 MOB3CQ70IA8 216 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 PAQR8Q8TEZ7 354 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 DYRK2Q92630 601 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 R4GMQ9 66 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 GP1BBP13224 206 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 DRD1P21728 446 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 SFTPDP35247 375 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 PSMD4P55036 377 aaKnown RBP9.47□□□□□ -0.89
USP28-201ENST00000003302 SLC26A5P58743 744 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 MRPS10P82664 201 aaKnown RBP9.47□□□□□ -0.89
USP28-201ENST00000003302 GLO1Q04760 184 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 LDLRAD3Q86YD5 345 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 SLC25A45Q8N413 288 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 ASB10Q8WXI3 467 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 ZNF578Q96N58 590 aaPredicted RBP9.47□□□□□ -0.89
USP28-201ENST00000003302 LIME1Q9H400 295 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 ASH2LQ9UBL3 628 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 CA14Q9ULX7 337 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 A0A1W2PR77 199 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 AGPAT2O15120 278 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 SERPINF1P36955 418 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 MC2RQ01718 297 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 PDCD1Q15116 288 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 ANKRD55Q3KP44 614 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 SLC29A4Q7RTT9 530 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 ZFP82Q8N141 532 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 BSCL2Q96G97 398 aaPredicted RBP9.47□□□□□ -0.89
USP28-201ENST00000003302 HHLA2Q9UM44 414 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 DOCK10Q96BY6 2186 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 NCKAP5O14513 1909 aa9.47□□□□□ -0.89
USP28-201ENST00000003302 CD74P04233 296 aa9.46□□□□□ -0.89
USP28-201ENST00000003302 GP1BAP07359 652 aa9.46□□□□□ -0.89
USP28-201ENST00000003302 DBHP09172 617 aa9.46□□□□□ -0.89
USP28-201ENST00000003302 GIMD1P0DJR0 217 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms