RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ZNF391Q9UJN7 358 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 CES1P1Q9UKY3 287 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OSGIN2Q9Y236 505 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 LOC100289279A0A1B0GTE1 492 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OR7C2O60412 319 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 S100A8P05109 93 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SUMO3P55854 103 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 HYAL1Q12794 435 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 RBMS2Q15434 407 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SLC9A3R2Q15599 337 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PHYHD1Q5SRE7 291 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OR6K3Q8NGY3 331 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OR5B3Q8NH48 314 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 BCL2L2Q92843 193 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TM4SF19Q96DZ7 209 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 NEIL1Q96FI4 390 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 JMJD8Q96S16 334 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ADAT1Q9BUB4 502 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 FER1L5A0AVI2 2057 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 FAM181BA6NEQ2 426 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 UBE2L6O14933 153 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SULT1C4O75897 302 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 DUSP1P28562 367 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 AQP6Q13520 282 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TUSC1Q2TAM9 212 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OR4D10Q8NGI6 311 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 MISP3Q96FF7 219 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 WDR61Q9GZS3 305 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OCIAD1Q9NX40 245 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 MARF1Q9Y4F3 1742 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 A0A1W2PPC1 479 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM30CPA0ZSE6 113 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 EME2A4GXA9 379 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 FRG2CA6NGY1 282 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 CRXO43186 299 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SPDEFO95238 335 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SCG5P05408 212 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 C19orf57Q0VDD7 668 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SLC10A2Q12908 348 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ARHGEF39Q8N4T4 335 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SUMF1Q8NBK3 374 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PDLIM5Q96HC4 596 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 C1QTNF3Q9BXJ4 246 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 QRSL1Q9H0R6 528 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SAP30LQ9HAJ7 183 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PLA2G3Q9NZ20 509 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 LPAR3Q9UBY5 353 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 B3GALT5Q9Y2C3 310 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 BRWD1Q9NSI6 2320 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF320A2RRD8 509 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 DBX1A6NMT0 343 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ADAM12O43184 909 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ITGAMP11215 1152 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 HBA1P69905 142 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ZXDAP98168 799 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TFF2Q03403 129 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TSPAN31Q12999 210 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 GTDC1Q4AE62 458 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 KRTCAP3Q53RY4 240 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 HIST2H3PS2Q5TEC6 136 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 STEAP1BQ6NZ63 245 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 GUSBP11Q6P575 273 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM217Q8N7C4 229 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 SLC30A7Q8NEW0 376 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 MUS81Q96NY9 551 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 MS4A8Q9BY19 250 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 H0Y8X5 98 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 H7C1C5 153 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ARPC5O15511 151 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PNLIPRP2P54317 469 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 RPS27AP62979 156 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 UBA52P62987 128 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PHLDA2Q53GA4 152 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 CYS1Q717R9 158 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 DNAJC5GQ8N7S2 189 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 OPALINQ96PE5 141 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 IGSF5Q9NSI5 407 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 MARCH5Q9NX47 278 aa5.58□□□□□ -1.52
SCN1A-217ENST00000637988 ZMAT5Q9UDW3 170 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 PURGQ9UJV8 347 aaKnown RBP5.58□□□□□ -1.52
SCN1A-217ENST00000637988 IGHV3-15A0A0B4J1V0 119 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 GUSBP08236 651 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 FGF3P11487 239 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 DDOSTP39656 456 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 GPM6AP51674 278 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 RAB6CQ53S08 254 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CCDC144NLQ6NUI1 221 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 FAHD2BQ6P2I3 314 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 Q7L0L9 218 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ABI3BPQ7Z7G0 1075 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 FAHD2AQ96GK7 314 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PGAP2Q9UHJ9 254 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF835Q9Y2P0 537 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PKD1L3Q7Z443 1732 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SBF1O95248 1867 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ONECUT2O95948 504 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 HAAOP46952 286 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PITX1P78337 314 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 MC2RQ01718 297 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ALKBH1Q13686 389 aaKnown RBP5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms