RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 H0YL77 283 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 H3BSA7 217 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 PTP4A3O75365 173 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 NDUFB2O95178 105 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 CD55P08174 381 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ZNF26P17031 533 aaPredicted RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 WNT5AP41221 380 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 OMPP47874 163 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 BTG1P62324 171 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ENDOGQ14249 297 aaKnown RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 KRT72Q14CN4 511 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ZMYND11Q15326 602 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 FGD3Q5JSP0 725 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 MBNL2Q5VZF2 373 aaKnown RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 GPR139Q6DWJ6 353 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ARL9Q6T311 187 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ZNF101Q8IZC7 436 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 MARS2Q96GW9 593 aaKnown RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 FAM46AQ96IP4 442 aaKnown RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 DHRS1Q96LJ7 313 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ZNF570Q96NI8 536 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 GPX7Q96SL4 187 aaPredicted RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 ELOVL3Q9HB03 270 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 ZDHHC8Q9ULC8 765 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 NDRG4Q9ULP0 352 aaKnown RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 SIGLEC7Q9Y286 467 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 LRCH1Q9Y2L9 728 aa13.62□□□□□ -0.23
CLN3-264ENST00000637985 EPPK1P58107 5090 aaKnown RBP13.62□□□□□ -0.23
CLN3-264ENST00000637985 H7C1C5 153 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 GPR137BO60478 399 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 COX5BP10606 129 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 HSD17B1P14061 328 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 SDHAP31040 664 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 LIPAP38571 399 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 ARHGDIAP52565 204 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 SMIM11AP58511 58 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 LCN6P62502 163 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 MESTQ5EB52 335 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 ZNF283Q8N7M2 679 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 ZSCAN4Q8NAM6 433 aaPredicted RBP13.61□□□□□ -0.23
CLN3-264ENST00000637985 SSMEM1Q8WWF3 244 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 RAB40AQ8WXH6 277 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 NRIP3Q9NQ35 241 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 CYSLTR2Q9NS75 346 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 MAGEL2Q9UJ55 1249 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 AURKCQ9UQB9 309 aa13.61□□□□□ -0.23
CLN3-264ENST00000637985 TEX13CA0A0J9YWL9 993 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 KIR2DS1A0A191URI9 304 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 SCG5P05408 212 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 WNT2P09544 360 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 TUBG1P23258 451 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 MPV17P39210 176 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 SCRN3Q0VDG4 424 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 KRR1Q13601 381 aaKnown RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 SAMD4BQ5PRF9 694 aaKnown RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 C11orf87Q6NUJ2 197 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 ZNF774Q6NX45 483 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 DPY19L2P2Q6ZN68 376 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 PGAM4Q8N0Y7 254 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 RNF148Q8N7C7 305 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 ABHD4Q8TB40 342 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 SLC25A40Q8TBP6 338 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 KLF14Q8TD94 323 aaPredicted RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 IPCEF1Q8WWN9 437 aaPredicted RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 PYURFQ96I23 114 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 RSRC1Q96IZ7 334 aaKnown RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 C4orf45Q96LM5 186 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 SIGLEC11Q96RL6 698 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 SSBP3Q9BWW4 388 aaPredicted RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 OR2J1Q9GZK6 312 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 C16orf95Q9H693 158 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 TUBG2Q9NRH3 451 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 NECAP2Q9NVZ3 263 aa13.6□□□□□ -0.23
CLN3-264ENST00000637985 AURKAIP1Q9NWT8 199 aaPredicted RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 VSX1Q9NZR4 365 aaPredicted RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 CGGBP1Q9UFW8 167 aaPredicted RBP13.6□□□□□ -0.23
CLN3-264ENST00000637985 DNAH9Q9NYC9 4486 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 TRBV4-1A0A0J9YWV2 114 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 CEACAM18A8MTB9 384 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 CTLA4P16410 223 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 CPT2P23786 658 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 RPS6KA3P51812 740 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 PPP1CBP62140 327 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 SEC23BQ15437 767 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 SPATA46Q5T0L3 261 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 GPR157Q5UAW9 335 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 Q6ZSV7 163 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 RFPL4BQ6ZWI9 263 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 ADCK1Q86TW2 530 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 FAM86B1Q8N7N1 296 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 OR52J3Q8NH60 311 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 TBC1D15Q8TC07 691 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 RASD2Q96D21 266 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 FUZQ9BT04 418 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 EMC7Q9NPA0 242 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 TBCCD1Q9NVR7 557 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 CD300AQ9UGN4 299 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 TAGLN3Q9UI15 199 aa13.59□□□□□ -0.23
CLN3-264ENST00000637985 UNC119BA6NIH7 251 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 TNFRSF13BO14836 293 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms