RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 DEFB110Q30KQ9 67 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM196Q5HYL7 178 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 LINC01590Q5TEZ4 76 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM225Q6GV28 225 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 LYG2Q86SG7 212 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 COMMD2Q86X83 199 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SFTPA1Q8IWL2 248 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SHISA5Q8N114 240 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SLC22A24Q8N4F4 322 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 PNLDC1Q8NA58 520 aaKnown RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 CLRN3Q8NCR9 226 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM185AQ8NFB2 350 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 OR5M8Q8NGP6 311 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SLC37A2Q8TED4 501 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 PCNPQ8WW12 178 aaKnown RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 FAM131CQ96AQ9 280 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 MVB12AQ96EY5 273 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SLC41A2Q96JW4 573 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 S100A13Q99584 98 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SERINC1Q9NRX5 453 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 CA10Q9NS85 328 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ANKRD10Q9NXR5 420 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 COQ3Q9NZJ6 369 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF346Q9UL40 294 aaKnown RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 R4GMQ9 66 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 VPS13AQ96RL7 3174 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 BAHCC1Q9P281 2608 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 A0A1W2PQD3 144 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 OR6C76A6NM76 312 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 A8MXK9 166 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ATP6V1G2-DDX39BF2Z307 99 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 K7ESF4 209 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TOR1AO14656 332 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TLX3O43711 291 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SNAPINO95295 136 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 CFDP00746 253 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 NGFRP08138 427 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ASAH2BP0C7U1 165 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 MAOAP21397 527 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 FCARP24071 287 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 BDKRB2P30411 391 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 KIR2DL1P43626 348 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 GPR3P46089 330 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 CX3CR1P49238 355 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 IL13RA1P78552 427 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 MAT1AQ00266 395 aaKnown RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF169Q14929 603 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 GXYLT1Q4G148 440 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 WDR38Q5JTN6 314 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 GLYATL3Q5SZD4 288 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF684Q5T5D7 378 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 KIAA0895LQ68EN5 471 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 FAAP20Q6NZ36 180 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 CFAP77Q6ZQR2 320 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SLC36A1Q7Z2H8 476 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 GRINAQ7Z429 371 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 LINC00518Q8N0U6 118 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM52Q8NDY8 209 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 OR4N2Q8NGD1 307 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 OR52B4Q8NGK2 314 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 OR6S1Q8NH40 331 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 OR52N5Q8NH56 324 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 FLVCR1-AS1Q8TAF5 88 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 STOML3Q8TAV4 291 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 PRR7Q8TB68 274 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 GCDHQ92947 438 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 CPNE2Q96FN4 548 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-214ENST00000637038 LINC00052Q96N35 136 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 IP6K3Q96PC2 410 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 TSPAN32Q96QS1 320 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 MOB1AQ9H8S9 216 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 C2orf42Q9NWW7 574 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 NDRG3Q9UGV2 375 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 B9D1Q9UPM9 204 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 SLC5A6Q9Y289 635 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 HRH3Q9Y5N1 445 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 ACACBO00763 2458 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 NUMA1Q14980 2115 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM272A0A1B0GTI8 110 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 TCRBV21S2A2A0A5A6 115 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 TLCD2A6NGC4 264 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 RHPN2P1A8MT19 583 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 NARSO43776 548 aaKnown RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 AKR7A3O95154 331 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 IGKV1D-16P01601 117 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 FCER2P06734 321 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 HOXD4P09016 255 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 THEGLP0DJG4 465 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 VSIG10L2P0DP72 767 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 ST6GAL1P15907 406 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 CNR1P21554 472 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 FBLP22087 321 aaKnown RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 OR3A2P47893 321 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 ROM1Q03395 351 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 DBPQ10586 325 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 PMPCAQ10713 525 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 SKP2Q13309 424 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 SNTB1Q13884 538 aaKnown RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 ELAVL1Q15717 326 aaKnown RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 PAN3Q58A45 887 aaKnown RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms