RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SRP9P49458 86 aaKnown RBP13.5□□□□□ -0.25
CLN3-246ENST00000636228 HIST1H3AP68431 136 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 DGCR6Q14129 220 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 KCNMB1Q16558 191 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 HIST2H3PS2Q5TEC6 136 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 C8orf82Q6P1X6 216 aaPredicted RBP13.5□□□□□ -0.25
CLN3-246ENST00000636228 LEG1Q6P5S2 330 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 LYPD2Q6UXB3 125 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 BTNL3Q6UXE8 466 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 DPY19L2P2Q6ZN68 376 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 HIST2H3AQ71DI3 136 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 LINC00346Q8IVM7 164 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 FAM86B1Q8N7N1 296 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 GJC3Q8NFK1 279 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 RAB40AQ8WXH6 277 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 SLC25A28Q96A46 364 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 APOBEC3DQ96AK3 386 aaPredicted RBP13.5□□□□□ -0.25
CLN3-246ENST00000636228 ERMAPQ96PL5 475 aaPredicted RBP13.5□□□□□ -0.25
CLN3-246ENST00000636228 GPX7Q96SL4 187 aaPredicted RBP13.5□□□□□ -0.25
CLN3-246ENST00000636228 HOPXQ9BPY8 73 aaPredicted RBP13.5□□□□□ -0.25
CLN3-246ENST00000636228 SLC30A2Q9BRI3 323 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 ANKRD19PQ9H560 264 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 ZNF696Q9H7X3 374 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 TNFRSF19Q9NS68 423 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 B9D1Q9UPM9 204 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 AURKCQ9UQB9 309 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 MGAM2Q2M2H8 2515 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 IGLV1-36A0A0B4J1U3 117 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 TRAV40A0A0B4J280 105 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 IQCF6A8MYZ5 107 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 SLC22A2O15244 555 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 FPR3P25089 353 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 RPS6KA3P51812 740 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 LRRN1Q6UXK5 716 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 BRD3OSQ6XYD6 125 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 ADCK1Q86TW2 530 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 OR6V1Q8N148 313 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 NEIL1Q96FI4 390 aaPredicted RBP13.49□□□□□ -0.25
CLN3-246ENST00000636228 C7orf34Q96L11 122 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 NMNAT3Q96T66 252 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 COQ7Q99807 217 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 KCTD14Q9BQ13 255 aaPredicted RBP13.49□□□□□ -0.25
CLN3-246ENST00000636228 ZMAT3Q9HA38 289 aaKnown RBP13.49□□□□□ -0.25
CLN3-246ENST00000636228 TMEM100Q9NV29 134 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 MIOXQ9UGB7 285 aa13.49□□□□□ -0.25
CLN3-246ENST00000636228 FAM32AQ9Y421 112 aaKnown RBP13.49□□□□□ -0.25
CLN3-246ENST00000636228 F5H5K5 113 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 IFNL4K9M1U5 179 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 TXNDC12O95881 172 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 PLATP00750 562 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 MDKP21741 143 aaPredicted RBP13.48□□□□□ -0.25
CLN3-246ENST00000636228 MTNR1AP48039 350 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 NUDT2P50583 147 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 MAB21L1Q13394 359 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 ZNF404Q494X3 552 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 PRAMEF6Q5VXH4 476 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 CFAP77Q6ZQR2 320 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 DACT3Q96B18 629 aaPredicted RBP13.48□□□□□ -0.25
CLN3-246ENST00000636228 SLCO4A1Q96BD0 722 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 UPRTQ96BW1 309 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 NUDT16L1Q9BRJ7 211 aaKnown RBP13.48□□□□□ -0.25
CLN3-246ENST00000636228 CDADC1Q9BWV3 514 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 HDHD2Q9H0R4 259 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 FN3KQ9H479 309 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 EFCAB1Q9HAE3 211 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 UFSP2Q9NUQ7 469 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 ATPIF1Q9UII2 106 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 V9GYQ6 96 aa13.48□□□□□ -0.25
CLN3-246ENST00000636228 KIR2DS1A0A191URI9 304 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 LRRC30A6NM36 301 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 J3QW42 95 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 HOXA3O43365 443 aaPredicted RBP13.47□□□□□ -0.25
CLN3-246ENST00000636228 ATP8B1O43520 1251 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 ACSM4P0C7M7 580 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 HIST1H1CP16403 213 aaKnown RBP13.47□□□□□ -0.25
CLN3-246ENST00000636228 RHCEP18577 417 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 CRABP1P29762 137 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 MDH1P40925 334 aaKnown RBP13.47□□□□□ -0.25
CLN3-246ENST00000636228 PITPNBP48739 271 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 PSME3P61289 254 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 IL13RA1P78552 427 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 COX10Q12887 443 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 GK2Q14410 553 aaPredicted RBP13.47□□□□□ -0.25
CLN3-246ENST00000636228 DEFB112Q30KQ8 113 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 GLYATQ6IB77 296 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 SLC18B1Q6NT16 456 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 DNM1P34Q6PK57 102 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 SMARCD3Q6STE5 483 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 SPATC1Q76KD6 591 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 RNF148Q8N7C7 305 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 OR8B3Q8NGG8 313 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 OR10S1Q8NGN2 331 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 OR4K13Q8NH42 304 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 PLEKHA8Q96JA3 519 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 OR8B2Q96RD0 313 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 PITX2Q99697 317 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 HCAR1Q9BXC0 346 aa13.47□□□□□ -0.25
CLN3-246ENST00000636228 CLDN34H7C241 214 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 FAM20BO75063 409 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 LCATP04180 440 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms