RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZMAT3Q9HA38 289 aaKnown RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SERINC1Q9NRX5 453 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 CENPMQ9NSP4 180 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 B3GAT1Q9P2W7 334 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 VSIG4Q9Y279 399 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 IGLV3-32A0A0A0MS00 114 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 VSTM2BA6NLU5 285 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 UBBP0CG47 229 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 ZBTB25P24278 435 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 MSX1P28360 303 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 CD34P28906 385 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 NUP62P37198 522 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 FOXL2P58012 376 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 RPS27AP62979 156 aaKnown RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 UBA52P62987 128 aaKnown RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 PDZD9Q8IXQ8 264 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 ADPRHL1Q8NDY3 354 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 OR10H5Q8NGA6 315 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 OR52N4Q8NGI2 321 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 ADAT3Q96EY9 351 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 C5orf34Q96MH7 638 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 NUDT22Q9BRQ3 303 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 B3GNT4Q9C0J1 378 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 SHARPINQ9H0F6 387 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 MYEF2Q9P2K5 600 aaKnown RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 RPH3AQ9Y2J0 694 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 HRH3Q9Y5N1 445 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 FER1L5A0AVI2 2057 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 EFNA2O43921 213 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 HPP00738 406 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 LAP3P28838 519 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 BIDP55957 195 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 CLDN6P56747 220 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF345Q14585 488 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 RNASE10Q5GAN6 216 aaKnown RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 FAHD2BQ6P2I3 314 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 KLHL24Q6TFL4 600 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 TRAPPC6BQ86SZ2 158 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF546Q86UE3 836 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 KCNRGQ8N5I3 272 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 BVESQ8NE79 360 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 OR4S1Q8NGB4 309 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 MRGPRFQ96AM1 343 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 FAHD2AQ96GK7 314 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 MRGPRX4Q96LA9 322 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 PHF7Q9BWX1 381 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 SLC25A32Q9H2D1 315 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 GPN3Q9UHW5 284 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-203ENST00000631321 CA14Q9ULX7 337 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 VDAC3Q9Y277 283 aa11.36□□□□□ -0.59
LINC00540-203ENST00000631321 KIF26BQ2KJY2 2108 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 OR5H14A6NHG9 310 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 POM121CA8CG34 1229 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 TOX3O15405 576 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-203ENST00000631321 MBTPS2O43462 519 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 SYT7O43581 403 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 VSIG8P0DPA2 414 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 TBPP20226 339 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 HYAL4Q2M3T9 481 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 CDNFQ49AH0 187 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 SCGB2B2Q4G0G5 96 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 THEM4Q5T1C6 240 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 LYG2Q86SG7 212 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 DTWD2Q8NBA8 298 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 DNASE2BQ8WZ79 361 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 ZBTB8AQ96BR9 441 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 MESP1Q9BRJ9 268 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 MOB1AQ9H8S9 216 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF230Q9UIE0 474 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-203ENST00000631321 FBXO4Q9UKT5 387 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 TNFSF18Q9UNG2 199 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 FARSAQ9Y285 508 aaKnown RBP11.35□□□□□ -0.59
LINC00540-203ENST00000631321 SLC5A6Q9Y289 635 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 B3GALT1Q9Y5Z6 326 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 TMEM14DPA8MWL7 114 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 EIF1AYO14602 144 aaKnown RBP11.35□□□□□ -0.59
LINC00540-203ENST00000631321 OR2F2O95006 317 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 HEXBP07686 556 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 MYF5P13349 255 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 P2RY4P51582 365 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 CXADRP78310 365 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 SMAD4Q13485 552 aaKnown RBP11.35□□□□□ -0.59
LINC00540-203ENST00000631321 OR2F1Q13607 317 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 TUSC1Q2TAM9 212 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 PLPPR5Q32ZL2 321 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 RHOUQ7L0Q8 258 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 OR5D14Q8NGL3 314 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 POC1BQ8TC44 478 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 WDR77Q9BQA1 342 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-203ENST00000631321 FBXL2Q9UKC9 423 aa11.35□□□□□ -0.59
LINC00540-203ENST00000631321 HLA-AP01891 365 aaKnown RBP11.34□□□□□ -0.59
LINC00540-203ENST00000631321 RLN2P04090 185 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 RAB3AP20336 220 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 GNALP38405 381 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 PTGDSP41222 190 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 NKAIN1Q4KMZ8 207 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 LIN54Q6MZP7 749 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 C11orf87Q6NUJ2 197 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 C17orf107Q6ZR85 190 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 THAP3Q8WTV1 239 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms