RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 RPS15P62841 145 aaKnown RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 CSNK1G2P78368 415 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 INPP5JQ15735 1006 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 FAHD2BQ6P2I3 314 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 PLXDC1Q8IUK5 500 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HMGCLL1Q8TB92 370 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HGDQ93099 445 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 FAHD2AQ96GK7 314 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ARHGDIGQ99819 225 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ZDHHC11Q9H8X9 412 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 NGBQ9NPG2 151 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A4GNTQ9UNA3 340 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A0A087WV62 115 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 TCRBV16S1A1N1A0A5B0 115 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 B4DEV8 164 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 B3GALT4O96024 378 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HNF1AP20823 631 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PRSS54Q6PEW0 395 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 IL22RA1Q8N6P7 574 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 SIRT6Q8N6T7 355 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 SLC16A11Q8NCK7 471 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 FAM103A1Q9BTL3 118 aaKnown RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 OR51M1Q9H341 326 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 OR14J1Q9UGF5 321 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ARID1BQ8NFD5 2236 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 TMED7-TICAM2A0A0A6YYA0 188 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A0A0A6YYC8 382 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 KIR2DS5A0A0G2JLQ3 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A0A0G2JNG1 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 XKRY2A2RUG3 117 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 C7orf66A4D0T2 115 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 OR52A4PA6NMU1 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 I3L1I5 382 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 KIR2DS3K7RE56 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 TRAF3IP2O43734 574 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 MPC2O95563 127 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PNRC1Q12796 327 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 MFAP5Q13361 173 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 KIR2DS5Q14953 304 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LCN15Q6UWW0 184 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 KDF1Q8NAX2 398 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 ZNF740Q8NDX6 193 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 SLC35A4Q96G79 324 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LYRM4Q9HD34 91 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 TMED7Q9Y3B3 224 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 RP1P56715 2156 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A6NCN8 305 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ERVH48-1M5A8F1 160 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HEXAP06865 529 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ELLP55199 621 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 PPP1CBP62140 327 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 RAB35Q15286 201 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 KIAA0895LQ68EN5 471 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PLXDC2Q6UX71 529 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 CYHR1Q6ZMK1 362 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PRRX2Q99811 253 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 BET1LQ9NYM9 111 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 CA14Q9ULX7 337 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 TRAPPC1Q9Y5R8 145 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 FIGNL2A6NMB9 653 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 OR8U8P0C7N1 319 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 PYCR3Q53H96 274 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 C9orf152Q5JTZ5 239 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 INSM2Q96T92 566 aaPredicted RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 CHRDL1Q9BU40 450 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 SIRT7Q9NRC8 400 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A0A1W2PPH5 198 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 A0A1W2PPQ1 181 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 CTNSO60931 367 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 P04436 131 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LIMS3P0CW19 117 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LIMS4P0CW20 117 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HTRA3P83110 453 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 HNRNPA1L2Q32P51 320 aaKnown RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 TOMM20LQ6UXN7 152 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 ABI3BPQ7Z7G0 1075 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 OR4A16Q8NH70 328 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 CDH20Q9HBT6 801 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 MRPL22Q9NWU5 206 aaKnown RBP8.12□□□□□ -1.11
VCL-206ENST00000623461 LPAR3Q9UBY5 353 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 VDAC3Q9Y277 283 aa8.12□□□□□ -1.11
VCL-206ENST00000623461 LOC105371267A0A1B0GV96 52 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 C9orf170A2RU37 121 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 OR5K3A6NET4 321 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 MFNGO00587 321 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 CTSAP10619 480 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 KRTDAPP60985 99 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 DHRS2Q13268 280 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ZNF79Q15937 498 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 MSRB3Q8IXL7 192 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 C19orf53Q9UNZ5 99 aaPredicted RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 YTHDF2Q9Y5A9 579 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 R4GMQ9 66 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ARL2-SNX15V9GYD0 113 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ASXL3Q9C0F0 2248 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 UTS2O95399 124 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 OPN1MWP04001 364 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 OPN1MW2P0DN77 364 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 OPN1MW3P0DN78 364 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 CXCL3P19876 107 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms