RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MYO7BQ6PIF6 2116 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 EPXP11678 715 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ARF1P84077 181 aaKnown RBP13.94□□□□□ -0.18
CPSF1-213ENST00000620219 SNTB2Q13425 540 aaKnown RBP13.94□□□□□ -0.18
CPSF1-213ENST00000620219 TMEM81Q6P7N7 255 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 OR2AE1Q8NHA4 323 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 LIPHQ8WWY8 451 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 MED18Q9BUE0 208 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 NELFAQ9H3P2 528 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 MEGF11A6BM72 1044 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 DHFRP00374 187 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF32P17041 273 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 PCBD1P61457 104 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 TGFBR3Q03167 851 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 FADS6Q8N9I5 356 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 RADILQ96JH8 1075 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 JAM3Q9BX67 310 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 ABRACLQ9P1F3 81 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 NUFIP1Q9UHK0 495 aaKnown RBP13.93□□□□□ -0.18
CPSF1-213ENST00000620219 CSAG2Q9Y5P2 127 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 NEURL1O76050 574 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 PNPP00491 289 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 APLNRP35414 380 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 TSPAN5P62079 268 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 PYHIN1Q6K0P9 492 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 MRPL21Q7Z2W9 205 aaKnown RBP13.93□□□□□ -0.18
CPSF1-213ENST00000620219 SLCO5A1Q9H2Y9 848 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 CACNA1BQ00975 2339 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 TSC22D2O75157 780 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF254O75437 659 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 RAD51DO75771 328 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 HTR2CP28335 458 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 PSMF1Q92530 271 aa13.93□□□□□ -0.18
CPSF1-213ENST00000620219 IFITM5A6NNB3 132 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 RBBP9O75884 186 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 CALCBP10092 127 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 GTF2F2P13984 249 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 BDKRB2P30411 391 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 DGCR2P98153 550 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 CDC20Q12834 499 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 ZP4Q12836 540 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 MALLQ13021 153 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SLC36A2Q495M3 483 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SETD6Q8TBK2 473 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 TIMP4Q99727 224 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 NXF2Q9GZY0 626 aaKnown RBP13.92□□□□□ -0.18
CPSF1-213ENST00000620219 EML6Q6ZMW3 1958 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 LOC102725191A0A1B0GVB3 256 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 OGG1O15527 345 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 MT-ND4P03905 459 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 ERCC1P07992 297 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-213ENST00000620219 EIF2S3P41091 472 aaKnown RBP13.92□□□□□ -0.18
CPSF1-213ENST00000620219 ETV6P41212 452 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 CD200R1LQ6Q8B3 271 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 CFAP77Q6ZQR2 320 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 TEX19Q8NA77 164 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 ADAMTS14Q8WXS8 1223 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SP140LQ9H930 580 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 PIGLQ9Y2B2 252 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 OR4C45A6NMZ5 311 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 EEF1E1-BLOC1S5C9J1V9 151 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 WNT11O96014 354 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 GGTLC2Q14390 218 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 TBRG1Q3YBR2 411 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF782Q6ZMW2 699 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-213ENST00000620219 FAM109AQ8N4B1 249 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 FAM3DQ96BQ1 224 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 TP63Q9H3D4 680 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-213ENST00000620219 NUDT15Q9NV35 164 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 C5orf49A4QMS7 147 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 J3QRE1 110 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 CYB5AP00167 134 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 PGA4P0DJD7 388 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 PGA3P0DJD8 388 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SERPINA2P20848 420 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 AP3S2P59780 193 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 TSPO2Q5TGU0 170 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 BEST4Q8NFU0 473 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 TNFAIP8L1Q8WVP5 186 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SARAFQ96BY9 339 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SCNM1Q9BWG6 230 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 NIPAL2Q9H841 368 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 CDH20Q9HBT6 801 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 PAQR5Q9NXK6 330 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-213ENST00000620219 SLC7A11Q9UPY5 501 aa13.92□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF318Q5VUA4 2279 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 TRAV8-7A0A075B6U6 113 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 AQP8O94778 261 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 HTR3BO95264 441 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 FAUP35544 74 aaKnown RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 IDH3GP51553 393 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 GRB2P62993 217 aaKnown RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ACSM1Q08AH1 577 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 BORCS8Q96FH0 119 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 AUNIPQ9H7T9 357 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 SIAEQ9HAT2 523 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF221Q9UK13 617 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 TBC1D24Q9ULP9 559 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 INMT-MINDY4F8WBC2 141 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ORC5O43913 435 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms