RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FKBP14Q9NWM8 211 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 SLCO1C1Q9NYB5 712 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 CNOT2Q9NZN8 540 aaKnown RBP17■□□□□ 0.31
UPF3A-211ENST00000618700 PSORS1C1Q9UIG5 152 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 MYRFQ9Y2G1 1151 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 LRP12Q9Y561 859 aa17■□□□□ 0.31
UPF3A-211ENST00000618700 RAI1Q7Z5J4 1906 aaPredicted RBP17■□□□□ 0.31
UPF3A-211ENST00000618700 TACC2O95359 2948 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 IRGMA1A4Y4 181 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 EFCAB10A6NFE3 127 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 E7EQL1 145 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 F5H5K5 113 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ABHD16AO95870 558 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ADRA2AP08913 450 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 H2BFMP0C1H6 154 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 RGS6P49758 472 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 UCP2P55851 309 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 TPTEP56180 551 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 CSNK2BP67870 215 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 DRAM2Q6UX65 266 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 KRT77Q7Z794 578 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 TMEM200AQ86VY9 491 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF679Q8IYX0 411 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 GGHQ92820 318 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF649Q9BS31 505 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 C1QTNF5Q9BXJ0 243 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF442Q9H7R0 627 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 INPP5EQ9NRR6 644 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 CA10Q9NS85 328 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 TBCCD1Q9NVR7 557 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 EIF3KQ9UBQ5 218 aaKnown RBP16.99■□□□□ 0.31
UPF3A-211ENST00000618700 MRM2Q9UI43 246 aaKnown RBP16.99■□□□□ 0.31
UPF3A-211ENST00000618700 POU2F3Q9UKI9 436 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 GRIP1Q9Y3R0 1128 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ATP23Q9Y6H3 246 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 ABCA12Q86UK0 2595 aa16.99■□□□□ 0.31
UPF3A-211ENST00000618700 J3QW42 95 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 PSMD9O00233 223 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 HS3ST1O14792 307 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 GPRIN2O60269 458 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 FAM20BO75063 409 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF254O75437 659 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 CCDC159P0C7I6 412 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 FAM157BP0CG42 384 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 HSD11B1P28845 292 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 PRKXP51817 358 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 TAF13Q15543 124 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 ARL9Q6T311 187 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 TMEM171Q8WVE6 324 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 DOK1Q99704 481 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 MROQ9BYG7 248 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 BCL2L14Q9BZR8 327 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 NIPAL2Q9H841 368 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 ELOVL3Q9HB03 270 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 UBAP1Q9NZ09 502 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 SPEF1Q9Y4P9 236 aa16.98■□□□□ 0.31
UPF3A-211ENST00000618700 APCP25054 2843 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 LRBAP50851 2863 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 DAPL1A0PJW8 107 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 MAGEB4O15481 346 aaPredicted RBP16.97■□□□□ 0.31
UPF3A-211ENST00000618700 NGFP01138 241 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 DCKP27707 260 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 DCTDP32321 178 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 THBS4P35443 961 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 GLRXP35754 106 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 RAD52P43351 418 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 PSMA6P60900 246 aaKnown RBP16.97■□□□□ 0.31
UPF3A-211ENST00000618700 MSMPQ1L6U9 139 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 CDONQ4KMG0 1287 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 UNQ6126/PRO20091Q6UXV3 157 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 NAA40Q86UY6 237 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 ABHD4Q8TB40 342 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 FBXW5Q969U6 566 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 OR51B6Q9H340 312 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 CISD1Q9NZ45 108 aaKnown RBP16.97■□□□□ 0.31
UPF3A-211ENST00000618700 IKZF2Q9UKS7 526 aa16.97■□□□□ 0.31
UPF3A-211ENST00000618700 DIMT1Q9UNQ2 313 aaKnown RBP16.97■□□□□ 0.31
UPF3A-211ENST00000618700 SULT1C4O75897 302 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 APOC1P02654 83 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 ANOS1P23352 680 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 CX3CR1P49238 355 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 RIDAP52758 137 aaKnown RBP16.96■□□□□ 0.31
UPF3A-211ENST00000618700 ERVS71-1P61550 626 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 RPS23P62266 143 aaKnown RBP16.96■□□□□ 0.31
UPF3A-211ENST00000618700 ST3GAL4Q11206 333 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 GALEQ14376 348 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 AHSA2Q719I0 299 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 PRSS45Q7RTY3 260 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.96■□□□□ 0.31
UPF3A-211ENST00000618700 C1orf174Q8IYL3 243 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF283Q8N7M2 679 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 ZNF611Q8N823 705 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 SNX33Q8WV41 574 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 APOBEC3DQ96AK3 386 aaPredicted RBP16.96■□□□□ 0.31
UPF3A-211ENST00000618700 DHRS9Q9BPW9 319 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 PAK1IP1Q9NWT1 392 aaPredicted RBP16.96■□□□□ 0.31
UPF3A-211ENST00000618700 ERVK13-1Q9NX77 482 aa16.96■□□□□ 0.31
UPF3A-211ENST00000618700 METTL15A6NJ78 407 aa16.95■□□□□ 0.3
UPF3A-211ENST00000618700 SRSF10O75494 262 aaKnown RBP16.95■□□□□ 0.3
UPF3A-211ENST00000618700 KRT8P05787 483 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms