RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 NMNAT3Q96T66 252 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 PITX2Q99697 317 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 IFT27Q9BW83 186 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 CDADC1Q9BWV3 514 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 SSBP3Q9BWW4 388 aaPredicted RBP14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 HCAR1Q9BXC0 346 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 NSRP1Q9H0G5 558 aaKnown RBP14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 FN3KQ9H479 309 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 TMEM165Q9HC07 324 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 TMEM100Q9NV29 134 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 B9D1Q9UPM9 204 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 DOCK11Q5JSL3 2073 aa14.75□□□□□ -0.05
SHKBP1-223ENST00000600552 F5H0A9 414 aaPredicted RBP14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 NDUFAB1O14561 156 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 WIPF1O43516 503 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 LCATP04180 440 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 IGHV4-38-2P0DP08 117 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 PRTN3P24158 256 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 CRABP1P29762 137 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 FOXL1Q12952 345 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 C8orf82Q6P1X6 216 aaPredicted RBP14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 BTNL3Q6UXE8 466 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 FBXW12Q6X9E4 464 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 KLBQ86Z14 1044 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 BOLLQ8N9W6 283 aaKnown RBP14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 OR2AJ1Q8NGZ0 328 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 GPX7Q96SL4 187 aaPredicted RBP14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 ELAC2Q9BQ52 826 aaKnown RBP14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 RPRD1BQ9NQG5 326 aaKnown RBP14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 TNFRSF19Q9NS68 423 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 UFSP2Q9NUQ7 469 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 ZNF446Q9NWS9 450 aa14.74□□□□□ -0.05
SHKBP1-223ENST00000600552 LRRC30A6NM36 301 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 MLNRO43193 412 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 HKR1P10072 659 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 IRF2P14316 349 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 FPR3P25089 353 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 NOS3P29474 1203 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 SLC6A6P31641 620 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 MDH1P40925 334 aaKnown RBP14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 KCNMB1Q16558 191 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 HACD2Q6Y1H2 254 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 NAA40Q86UY6 237 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 OR6V1Q8N148 313 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 PARP8Q8N3A8 854 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 C7orf34Q96L11 122 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 COQ7Q99807 217 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 TMEM246Q9BRR3 403 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 FAM107BQ9H098 131 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 HDHD2Q9H0R4 259 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 DCAF13Q9NV06 445 aaKnown RBP14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 MIOXQ9UGB7 285 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 SAMD4AQ9UPU9 718 aaKnown RBP14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 LRCH1Q9Y2L9 728 aa14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 POLR3KQ9Y2Y1 108 aaPredicted RBP14.73□□□□□ -0.05
SHKBP1-223ENST00000600552 IFNL4K9M1U5 179 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 OR10H3O60404 316 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 GADD45GO95257 159 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 TXNDC12O95881 172 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 HIST1H1CP16403 213 aaKnown RBP14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 MSX2P35548 267 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 PMELP40967 661 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 PAX8Q06710 450 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 RFX4Q33E94 735 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 SLC35F1Q5T1Q4 408 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 CFAP77Q6ZQR2 320 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 SDR9C7Q8NEX9 313 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 OR8B3Q8NGG8 313 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 SPRYD4Q8WW59 207 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 SLC25A28Q96A46 364 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 SLCO4A1Q96BD0 722 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 CMTM5Q96DZ9 223 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 NEIL1Q96FI4 390 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 PLEKHA8Q96JA3 519 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 OR8B2Q96RD0 313 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 SLC30A2Q9BRI3 323 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 ZNF747Q9BV97 191 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 OR52D1Q9H346 318 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 CCDC134Q9H6E4 229 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 N6AMT1Q9Y5N5 214 aa14.72□□□□□ -0.05
SHKBP1-223ENST00000600552 IGLV1-36A0A0B4J1U3 117 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 TRAV40A0A0B4J280 105 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 MDFIC2A0A1B0GVS7 189 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 A8MXK9 166 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 IQCF6A8MYZ5 107 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 PITPNBP48739 271 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 HIST1H3AP68431 136 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 MALLQ13021 153 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 RSPO1Q2MKA7 263 aaPredicted RBP14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 SLC36A3Q495N2 470 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 HIST2H3PS2Q5TEC6 136 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 PRAMEF6Q5VXH4 476 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 PGM2L1Q6PCE3 622 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 LYPD2Q6UXB3 125 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 LRRN1Q6UXK5 716 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 HIST2H3AQ71DI3 136 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 NLRC3Q7RTR2 1065 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 C1orf87Q8N0U7 546 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 OR11L1Q8NGX0 322 aa14.71□□□□□ -0.05
SHKBP1-223ENST00000600552 RAB40AQ8WXH6 277 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms