RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AKAP6Q13023 2319 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 TMEM129A0AVI4 362 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 OVOL3O00110 214 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 WBP4O75554 376 aaKnown RBP16.62■□□□□ 0.25
UPF1-209ENST00000600310 ZNF250P15622 560 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 ATP6V1E1P36543 226 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 EVX1P49640 407 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 ISL1P61371 349 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 DRAM2Q6UX65 266 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 USP51Q70EK9 711 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 SLC25A40Q8TBP6 338 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 ASB17Q8WXJ9 295 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 APOBEC3DQ96AK3 386 aaPredicted RBP16.62■□□□□ 0.25
UPF1-209ENST00000600310 RNFT2Q96EX2 444 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 MARS2Q96GW9 593 aaKnown RBP16.62■□□□□ 0.25
UPF1-209ENST00000600310 COG8Q96MW5 612 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 DOK1Q99704 481 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 C1QTNF5Q9BXJ0 243 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 MRPL37Q9BZE1 423 aaKnown RBP16.62■□□□□ 0.25
UPF1-209ENST00000600310 PLK3Q9H4B4 646 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 CXorf56Q9H5V9 222 aa16.62■□□□□ 0.25
UPF1-209ENST00000600310 ZNF670-ZNF695F2Z2N8 137 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 H3BSA7 217 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 PHYHO14832 338 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 APOL3O95236 402 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 GNAO1P09471 354 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 H2BFMP0C1H6 154 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 OR2T7P0C7T2 308 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 PRKXP51817 358 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 ROM1Q03395 351 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 DEFB113Q30KQ7 82 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 ZNF718Q3SXZ3 478 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 KCTD18Q6PI47 426 aaPredicted RBP16.61■□□□□ 0.25
UPF1-209ENST00000600310 DEGS2Q6QHC5 323 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 NAA40Q86UY6 237 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 C8orf59Q8N0T1 100 aaPredicted RBP16.61■□□□□ 0.25
UPF1-209ENST00000600310 OR5L1Q8NGL2 311 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 OR2T27Q8NH04 317 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 SYNPRQ8TBG9 265 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 OR2J1Q9GZK6 312 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 BEX4Q9NWD9 120 aaPredicted RBP16.61■□□□□ 0.25
UPF1-209ENST00000600310 FZR1Q9UM11 496 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 STARD10Q9Y365 291 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 SPG11Q96JI7 2443 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 ABCA12Q86UK0 2595 aa16.61■□□□□ 0.25
UPF1-209ENST00000600310 DSCAMO60469 2012 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 IGLV3-9A0A075B6K5 115 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 LCATP04180 440 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 DBTP11182 482 aaKnown RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 BMP4P12644 408 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 HSD11B1P28845 292 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 SNRPD2P62316 118 aaKnown RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 ZNF91Q05481 1191 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 SPATA46Q5T0L3 261 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 MBNL2Q5VZF2 373 aaKnown RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 KRT77Q7Z794 578 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 LRP11Q86VZ4 500 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 KLF14Q8TD94 323 aaPredicted RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 OR8B4Q96RC9 309 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 SYT3Q9BQG1 590 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 NIPAL2Q9H841 368 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 ZNF701Q9NV72 531 aaPredicted RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 DUSP13Q9UII6 198 aa16.6■□□□□ 0.25
UPF1-209ENST00000600310 FBXO9Q9UK97 447 aaPredicted RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 EXOGQ9Y2C4 368 aaKnown RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 RPL36Q9Y3U8 105 aaKnown RBP16.6■□□□□ 0.25
UPF1-209ENST00000600310 CSMD1Q96PZ7 3565 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 DCHS2Q6V1P9 2916 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 PRR32B1ATL7 298 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 J3QRE1 110 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 ZNF254O75437 659 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 APOC1P02654 83 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 PAX1P15863 534 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 GCH1P30793 250 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 VHLP40337 213 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 SLC6A9P48067 706 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 SELENOVP59797 346 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 CXCR4P61073 352 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 EGR3Q06889 387 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 C6orf52Q5T4I8 152 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 ZNF322Q6U7Q0 402 aaPredicted RBP16.59■□□□□ 0.25
UPF1-209ENST00000600310 LRRN1Q6UXK5 716 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 IZUMO2Q6UXV1 221 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 ZNF679Q8IYX0 411 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 RFLNBQ8N5W9 214 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 ZNF283Q8N7M2 679 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 OR10H4Q8NGA5 316 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 CNIH3Q8TBE1 160 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 FBLIM1Q8WUP2 373 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 CACNG6Q9BXT2 260 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 MROQ9BYG7 248 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 POFUT1Q9H488 388 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 AMBNQ9NP70 447 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 MRPS18AQ9NVS2 196 aaKnown RBP16.59■□□□□ 0.25
UPF1-209ENST00000600310 SLCO1C1Q9NYB5 712 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 PCDHGB1Q9Y5G3 927 aa16.59■□□□□ 0.25
UPF1-209ENST00000600310 A0A1W2PQL4 384 aaPredicted RBP16.58■□□□□ 0.24
UPF1-209ENST00000600310 CLPTM1O96005 669 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 IGHV3-13P01766 116 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms