RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CCDC182A6NF36 153 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 C17orf100A8MU93 164 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 H0YHG0 523 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 H3BSA7 217 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 PRODHO43272 600 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 TLX2O43763 284 aaPredicted RBP12.98□□□□□ -0.33
LIG1-219ENST00000600055 NAA10P41227 235 aaPredicted RBP12.98□□□□□ -0.33
LIG1-219ENST00000600055 RGS6P49758 472 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 PDLIM4P50479 330 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 MMP15P51511 669 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 EFNB1P98172 346 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 COLCA1Q6ZS62 124 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 CBR4Q8N4T8 237 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 UBASH3BQ8TF42 649 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 SNX33Q8WV41 574 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 APOBEC3DQ96AK3 386 aaPredicted RBP12.98□□□□□ -0.33
LIG1-219ENST00000600055 IL4I1Q96RQ9 567 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 COPS4Q9BT78 406 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 C1QTNF5Q9BXJ0 243 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 GABARAPL3Q9BY60 117 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 DDX28Q9NUL7 540 aaKnown RBP12.98□□□□□ -0.33
LIG1-219ENST00000600055 GPR160Q9UJ42 338 aa12.98□□□□□ -0.33
LIG1-219ENST00000600055 PURGQ9UJV8 347 aaKnown RBP12.98□□□□□ -0.33
LIG1-219ENST00000600055 MED13LQ71F56 2210 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 A0A096LNT2 108 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 ZSCAN5BA6NJL1 495 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 M0R135 149 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 SPRY3O43610 288 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 TIMM8AO60220 97 aaPredicted RBP12.97□□□□□ -0.33
LIG1-219ENST00000600055 BAG2O95816 211 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 LCATP04180 440 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 ALPLP05186 524 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 CSF3P09919 207 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 COL8A2P25067 703 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 ZNF81P51508 661 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 PRKXP51817 358 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 HCCSP53701 268 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 TPTEP56180 551 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 PRSS12P56730 875 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 CCL8P80075 99 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 MOGQ16653 247 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 TSTQ16762 297 aaKnown RBP12.97□□□□□ -0.33
LIG1-219ENST00000600055 ZIK1Q3SY52 487 aaPredicted RBP12.97□□□□□ -0.33
LIG1-219ENST00000600055 SLC35D3Q5M8T2 416 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 Q71RC1 249 aaPredicted RBP12.97□□□□□ -0.33
LIG1-219ENST00000600055 PQLC1Q8N2U9 271 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 TMEM163Q8TC26 289 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 SPTSSAQ969W0 71 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 HAVCR1Q96D42 359 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 ZNF799Q96GE5 643 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 TEAD3Q99594 435 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 ABHD6Q9BV23 337 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 MSL2Q9HCI7 577 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 USE1Q9NZ43 259 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 ENOPH1Q9UHY7 261 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 KLHDC2Q9Y2U9 406 aa12.97□□□□□ -0.33
LIG1-219ENST00000600055 LOC390937A0A1W2PQ73 354 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 VWC2LB2RUY7 222 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 ZNF878C9JN71 531 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 J3QW42 95 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 LY6G6DO95868 133 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 IGHV1-46P01743 117 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 MRPL3P09001 348 aaKnown RBP12.96□□□□□ -0.33
LIG1-219ENST00000600055 SLC2A1P11166 492 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 KITLGP21583 273 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 TUBG1P23258 451 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 OTX1P32242 354 aaPredicted RBP12.96□□□□□ -0.33
LIG1-219ENST00000600055 SLC6A9P48067 706 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 ALDH3A2P51648 485 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 TAF13Q15543 124 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 AADACL4Q5VUY2 407 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 OR2T2Q6IF00 324 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 Q6ZR03 302 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 SHFQ7M4L6 423 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 BIVMQ86UB2 503 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 OR5AS1Q8N127 324 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 ZNF786Q8N393 782 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 OR5L1Q8NGL2 311 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 THEM6Q8WUY1 208 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 YIPF5Q969M3 257 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 COG8Q96MW5 612 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 KCNJ15Q99712 375 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 SLC29A1Q99808 456 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 PRRG3Q9BZD7 231 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 MYOZ1Q9NP98 299 aaPredicted RBP12.96□□□□□ -0.33
LIG1-219ENST00000600055 TUBG2Q9NRH3 451 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 N6AMT1Q9Y5N5 214 aa12.96□□□□□ -0.33
LIG1-219ENST00000600055 PLSCR5A0PG75 271 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 MT-ND5P03915 603 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 RAC2P15153 192 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 SLC25A16P16260 332 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 SNAI3Q3KNW1 292 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 SPRNQ5BIV9 151 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 CLEC9AQ6UXN8 241 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 FBXW12Q6X9E4 464 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 OTOSQ8NHW6 89 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 RNF133Q8WVZ7 376 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 PIMREGQ9BSJ6 248 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 C9orf16Q9BUW7 83 aa12.95□□□□□ -0.34
LIG1-219ENST00000600055 BPESC1Q9GZL8 116 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms