RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SPRNQ5BIV9 151 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC16A9Q7RTY1 509 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 FAM81AQ8TBF8 368 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 THEM6Q8WUY1 208 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 CMBLQ96DG6 245 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 PTTG3PQ9NZH4 202 aa12.14□□□□□ -0.47
SHKBP1-217ENST00000598558 LYNX1G3V0Z9 82 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 M0R135 149 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 CASQ2O14958 399 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 MAGEB4O15481 346 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ENTPD6O75354 484 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 APOL3O95236 402 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 LYNX1P0DP58 116 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC2A1P11166 492 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 RBMXP38159 391 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 OPRL1P41146 370 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 MMP15P51511 669 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 EFNA4P52798 201 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 HNRNPA0Q13151 305 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 TNK1Q13470 666 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 GGTLC2Q14390 218 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 CLEC12BQ2HXU8 276 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 SNAI3Q3KNW1 292 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 OGFRL1Q5TC84 451 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ARL9Q6T311 187 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 Q6ZR03 302 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 SHFQ7M4L6 423 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 PRSS45Q7RTY3 260 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF525Q8N782 197 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 OR8J1Q8NGP2 316 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 HAVCR1Q96D42 359 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF799Q96GE5 643 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 KCNJ15Q99712 375 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 COPS4Q9BT78 406 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 TMUB1Q9BVT8 246 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ADGRL4Q9HBW9 690 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 DLL4Q9NR61 685 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF319Q9P2F9 582 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 ORC6Q9Y5N6 252 aa12.13□□□□□ -0.47
SHKBP1-217ENST00000598558 LOC100130705A0A1B0GUX0 176 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 A0A1W2PPW3 197 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 ZSCAN5BA6NJL1 495 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF878C9JN71 531 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 M0R233 179 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 PSMD9O00233 223 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 LILRA1O75019 489 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 NCR1O76036 304 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 HPXP02790 462 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 LCATP04180 440 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 GCH1P30793 250 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 MAGEB1P43366 347 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 TPTEP56180 551 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 SNRPGP62308 76 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 LRRN1Q6UXK5 716 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 LURAP1LQ8IV03 231 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 ENTHD1Q8IYW4 607 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 RHOXF1Q8NHV9 184 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 NRG4Q8WWG1 115 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 APOBEC3DQ96AK3 386 aaPredicted RBP12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 TTTY10Q9BZA0 68 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 PRRG3Q9BZD7 231 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 YIPF3Q9GZM5 350 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 DYNLRB1Q9NP97 96 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 SLCO1C1Q9NYB5 712 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 HAO2Q9NYQ3 351 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 H2AFY2Q9P0M6 372 aaPredicted RBP12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 PURGQ9UJV8 347 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 GMPPBQ9Y5P6 360 aa12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF469Q96JG9 3925 aaPredicted RBP12.12□□□□□ -0.47
SHKBP1-217ENST00000598558 IGHV4-30-2A0A087WSY4 118 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC16A6O15403 523 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 CLIC3O95833 236 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 LYNP07948 512 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 SBK2P0C263 348 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 BMP4P12644 408 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 KITLGP21583 273 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 COL8A2P25067 703 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 HTR1FP30939 366 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 RGS6P49758 472 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 NUDT6P53370 316 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 CDC42P60953 191 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 GK2Q14410 553 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 NKPD1Q17RQ9 610 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC25A30Q5SVS4 291 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 OR2T2Q6IF00 324 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 FBXW12Q6X9E4 464 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 SSX6Q7RTT6 188 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 C1orf174Q8IYL3 243 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF454Q8N9F8 522 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 OR51G2Q8NGK0 314 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 OR2AE1Q8NHA4 323 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 TRUB1Q8WWH5 349 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 SPTSSAQ969W0 71 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 DCLRE1BQ9H816 532 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 MSL2Q9HCI7 577 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 SMPD3Q9NY59 655 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 N6AMT1Q9Y5N5 214 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 HIVEP1P15822 2718 aa12.11□□□□□ -0.47
SHKBP1-217ENST00000598558 MAP1AP78559 2803 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 ITPR3Q14573 2671 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms