RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 B3GNT2Q9NY97 397 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 JKAMPQ9P055 326 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 ENPP5Q9UJA9 477 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 OR52A1Q9UKL2 312 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 STUB1Q9UNE7 303 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 SIRT4Q9Y6E7 314 aaPredicted RBP13.48□□□□□ -0.25
UPF1-206ENST00000598471 CEPT1Q9Y6K0 416 aa13.48□□□□□ -0.25
UPF1-206ENST00000598471 SPENQ96T58 3664 aaKnown RBP13.48□□□□□ -0.25
UPF1-206ENST00000598471 INTS1Q8N201 2190 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 F5H5K5 113 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 H3BSA7 217 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 ZNF701M0R085 212 aaPredicted RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 AIREO43918 545 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 HLA-DPB1P04440 258 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 ANXA2P07355 339 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 GNLYP22749 145 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 CRYGSP22914 178 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 GADD45AP24522 165 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 OTX1P32242 354 aaPredicted RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 APLNRP35414 380 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 SLC6A9P48067 706 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 NANOS3P60323 173 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 MFGE8Q08431 387 aaPredicted RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 TSC22D1Q15714 1073 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 C4orf17Q53FE4 359 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 WDR38Q5JTN6 314 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 TIMM23BQ5SRD1 257 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 ZNF704Q6ZNC4 412 aaPredicted RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 GDPGP1Q6ZNW5 385 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 MDP1Q86V88 176 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 LIX1LQ8IVB5 337 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 HSD17B8Q92506 261 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 GHSRQ92847 366 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 DGCR14Q96DF8 476 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 DCLRE1CQ96SD1 692 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 RBM38Q9H0Z9 239 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 OR10A4Q9H209 315 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 EXOSC4Q9NPD3 245 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 FAM206AQ9NX38 181 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 FRRS1LQ9P0K9 344 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 RSL24D1Q9UHA3 163 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 NUFIP1Q9UHK0 495 aaKnown RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 ERRFI1Q9UJM3 462 aaPredicted RBP13.47□□□□□ -0.25
UPF1-206ENST00000598471 SSR3Q9UNL2 185 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 ZNF281Q9Y2X9 895 aa13.47□□□□□ -0.25
UPF1-206ENST00000598471 LRRTM2O43300 516 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 SRSF10O75494 262 aaKnown RBP13.46□□□□□ -0.25
UPF1-206ENST00000598471 GABARAPO95166 117 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 UBCP0CG48 685 aaKnown RBP13.46□□□□□ -0.25
UPF1-206ENST00000598471 GALP22466 123 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 STOMP27105 288 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 ZNF121P58317 390 aaPredicted RBP13.46□□□□□ -0.25
UPF1-206ENST00000598471 RPS25P62851 125 aaKnown RBP13.46□□□□□ -0.25
UPF1-206ENST00000598471 YIF1BQ5BJH7 314 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 SSX8Q7RTT4 187 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 THRSPQ92748 146 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 RNF166Q96A37 237 aaPredicted RBP13.46□□□□□ -0.25
UPF1-206ENST00000598471 ISOC1Q96CN7 298 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 MUCL1Q96DR8 90 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 CCDC120Q96HB5 630 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 PGAM5Q96HS1 289 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 PGLYRP3Q96LB9 341 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 PBOV1Q9GZY1 135 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 BRD7Q9NPI1 651 aa13.46□□□□□ -0.25
UPF1-206ENST00000598471 POLEQ07864 2286 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 LOC100506127A0A0U1RQW1 187 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 ZNF503-AS2A6NEH8 195 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 OR4C45A6NMZ5 311 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 C16orf97H3BN30 126 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 RGS9O75916 674 aaPredicted RBP13.45□□□□□ -0.26
UPF1-206ENST00000598471 PNPP00491 289 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 SERPINA5P05154 406 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 DBHP09172 617 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 CBR1P16152 277 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 APEX1P27695 318 aaKnown RBP13.45□□□□□ -0.26
UPF1-206ENST00000598471 KIR3DL2P43630 455 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 ADORA2A-AS1P86434 159 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 TBC1D28Q2M2D7 210 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 KRTAP27-1Q3LI81 207 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 TMEM244Q5VVB8 128 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 PAMR1Q6UXH9 720 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 FAM57BQ71RH2 274 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 ELMOD2Q8IZ81 293 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 PRSS35Q8N3Z0 413 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 FAM169BQ8N8A8 192 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 WDR31Q8NA23 367 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 CPEB3Q8NE35 698 aaKnown RBP13.45□□□□□ -0.26
UPF1-206ENST00000598471 IL17RDQ8NFM7 739 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 OR52H1Q8NGJ2 320 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 OR1J2Q8NGS2 313 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 TMEM203Q969S6 136 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 S100PBPQ96BU1 408 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 PDCD1LG2Q9BQ51 273 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 CHCHD6Q9BRQ6 235 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 ACTR6Q9GZN1 396 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 OR51E2Q9H255 320 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 NOX3Q9HBY0 568 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 G6PC2Q9NQR9 355 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 GSTK1Q9Y2Q3 226 aa13.45□□□□□ -0.26
UPF1-206ENST00000598471 SF3B6Q9Y3B4 125 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms