RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PMS2P2O95744 297 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 HFEQ30201 348 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 Q6ZS52 159 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 FJX1Q86VR8 437 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 EXD3Q8N9H8 876 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 NPRL2Q8WTW4 380 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 PTPMT1Q8WUK0 201 aaPredicted RBP13.7□□□□□ -0.22
UPF1-204ENST00000596842 MCHR2Q969V1 340 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 TMPRSS13Q9BYE2 586 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 CST11Q9H112 138 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 CTSFQ9UBX1 484 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 SHPKQ9UHJ6 478 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 GPN3Q9UHW5 284 aaPredicted RBP13.7□□□□□ -0.22
UPF1-204ENST00000596842 AHSA1O95433 338 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 CD1AP06126 327 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 CSF2RBP32927 897 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 ASPHD2Q6ICH7 369 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 OR1M1Q8NGA1 313 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 GPBAR1Q8TDU6 330 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 KLHDC7BQ96G42 594 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 KLK13Q9UKR3 277 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 HHLA2Q9UM44 414 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 MUC22E2RYF6 1773 aaPredicted RBP13.69□□□□□ -0.22
UPF1-204ENST00000596842 A8MXK9 166 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 HRH1P35367 487 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 RABIFP47224 123 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 RPL27P61353 136 aaKnown RBP13.69□□□□□ -0.22
UPF1-204ENST00000596842 POU3F1Q03052 451 aaPredicted RBP13.69□□□□□ -0.22
UPF1-204ENST00000596842 GLO1Q04760 184 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 FUT7Q11130 342 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 BAMBIQ13145 260 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 LY6G6FQ5SQ64 297 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 CARD17Q5XLA6 110 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 ADAM5Q6NVV9 412 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 GPX8Q8TED1 209 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 TMEM41AQ96HV5 264 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 MESP1Q9BRJ9 268 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 TMED7-TICAM2A0A0A6YYA0 188 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 FGF2P09038 288 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 H2BFMP0C1H6 154 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 NQO2P16083 231 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 S100A2P29034 98 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 SLC37A1P57057 533 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 UBXN2BQ14CS0 331 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 SLC9A3R2Q15599 337 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 GPX7Q96SL4 187 aaPredicted RBP13.69□□□□□ -0.22
UPF1-204ENST00000596842 GSN-AS1Q9NRJ2 163 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 ZNF275Q9NSD4 429 aaPredicted RBP13.69□□□□□ -0.22
UPF1-204ENST00000596842 GSKIPQ9P0R6 139 aa13.69□□□□□ -0.22
UPF1-204ENST00000596842 A0A1B0GV50 99 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 EIF3GO75821 320 aaKnown RBP eCLIP13.68□□□□□ -0.22
UPF1-204ENST00000596842 FZD2Q14332 565 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 H3F3CQ6NXT2 135 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 OR2W3Q7Z3T1 314 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 OR5D18Q8NGL1 313 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 OR1S2Q8NGQ3 325 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 MAFIPQ8WZ33 124 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 DCUN1D4Q92564 292 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PIGQQ9BRB3 760 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 NUDT9Q9BW91 350 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 NKX2-4Q9H2Z4 354 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PTGES2Q9H7Z7 377 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PDE7BQ9NP56 450 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 VSIG4Q9Y279 399 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 CLDN16Q9Y5I7 305 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PCDH15Q96QU1 1955 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 NSA2O95478 260 aaKnown RBP13.68□□□□□ -0.22
UPF1-204ENST00000596842 ERCC1P07992 297 aaPredicted RBP13.68□□□□□ -0.22
UPF1-204ENST00000596842 MPGP29372 298 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PCP4P48539 62 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PRO1933Q9H354 126 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 TRAV36DV7A0A075B6V5 113 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 NPIPA5E9PKD4 350 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 DHODHQ02127 395 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PRTGQ2VWP7 1150 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 ADGRE4PQ86SQ3 457 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 ADAD2Q8NCV1 583 aaKnown RBP13.68□□□□□ -0.22
UPF1-204ENST00000596842 PHOSPHO2Q8TCD6 241 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 ROBO4Q8WZ75 1007 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 LRRC61Q9BV99 259 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 BANF2Q9H503 90 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 OR52A1Q9UKL2 312 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 NPIPA1Q9UND3 350 aa13.68□□□□□ -0.22
UPF1-204ENST00000596842 PRAMEF26H0Y7S4 382 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 STK17BO94768 372 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 HPP00738 406 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 YPEL5P62699 121 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 DMWDQ09019 674 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 OVCH2Q7RTZ1 564 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 OR6K3Q8NGY3 331 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 RNF128Q8TEB7 428 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 GPER1Q99527 375 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 ELL3Q9HB65 397 aaPredicted RBP13.67□□□□□ -0.22
UPF1-204ENST00000596842 CD207Q9UJ71 328 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 PCDHB10Q9UN67 800 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 TUBAL3A6NHL2 446 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 RHPN2P1A8MT19 583 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 PGCP20142 388 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 S100PP25815 95 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 AGTR1P30556 359 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms