RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 RFLNBQ8N5W9 214 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 ZNF283Q8N7M2 679 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 SLC37A3Q8NCC5 494 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 CCDC197Q8NCU1 140 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 OR52L1Q8NGH7 329 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 OR9Q1Q8NGQ5 310 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 RAB1CQ92928 201 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 PTP4A1Q93096 173 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 APOBEC3DQ96AK3 386 aaPredicted RBP11.01□□□□□ -0.65
LIG1-212ENST00000596549 CCDC124Q96CT7 223 aaKnown RBP11.01□□□□□ -0.65
LIG1-212ENST00000596549 ASB9Q96DX5 294 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 OR2V2Q96R30 315 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 ATF6BQ99941 703 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 REPIN1Q9BWE0 567 aaKnown RBP11.01□□□□□ -0.65
LIG1-212ENST00000596549 C1QTNF5Q9BXJ0 243 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 METTL17Q9H7H0 456 aaPredicted RBP11.01□□□□□ -0.65
LIG1-212ENST00000596549 TMEM106BQ9NUM4 274 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 TBC1D23Q9NUY8 699 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 PRPF19Q9UMS4 504 aaKnown RBP11.01□□□□□ -0.65
LIG1-212ENST00000596549 NPTNQ9Y639 398 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 COMMD3-BMI1R4GMX3 469 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 U3KQV3 271 aa11.01□□□□□ -0.65
LIG1-212ENST00000596549 LOC105371242A0A075B767 164 aa11□□□□□ -0.65
LIG1-212ENST00000596549 IQCF6A8MYZ5 107 aa11□□□□□ -0.65
LIG1-212ENST00000596549 H0YL77 283 aa11□□□□□ -0.65
LIG1-212ENST00000596549 SEC61A1P61619 476 aaKnown RBP11□□□□□ -0.65
LIG1-212ENST00000596549 SLC3A1Q07837 685 aa11□□□□□ -0.65
LIG1-212ENST00000596549 TRAP1Q12931 704 aaKnown RBP11□□□□□ -0.65
LIG1-212ENST00000596549 CRMP1Q14194 572 aa11□□□□□ -0.65
LIG1-212ENST00000596549 OR2T5Q6IEZ7 315 aa11□□□□□ -0.65
LIG1-212ENST00000596549 NAA40Q86UY6 237 aa11□□□□□ -0.65
LIG1-212ENST00000596549 LNX2Q8N448 690 aa11□□□□□ -0.65
LIG1-212ENST00000596549 BHLHE23Q8NDY6 225 aa11□□□□□ -0.65
LIG1-212ENST00000596549 SEMA6DQ8NFY4 1073 aa11□□□□□ -0.65
LIG1-212ENST00000596549 OR8G5Q8NG78 346 aa11□□□□□ -0.65
LIG1-212ENST00000596549 OR51L1Q8NGJ5 315 aa11□□□□□ -0.65
LIG1-212ENST00000596549 OR2T29Q8NH02 315 aa11□□□□□ -0.65
LIG1-212ENST00000596549 NIPSNAP1Q9BPW8 284 aa11□□□□□ -0.65
LIG1-212ENST00000596549 RBM4Q9BWF3 364 aaKnown RBP11□□□□□ -0.65
LIG1-212ENST00000596549 ARMC1Q9NVT9 282 aa11□□□□□ -0.65
LIG1-212ENST00000596549 TAS2R1Q9NYW7 299 aa11□□□□□ -0.65
LIG1-212ENST00000596549 UBAP1Q9NZ09 502 aa11□□□□□ -0.65
LIG1-212ENST00000596549 IL19Q9UHD0 177 aa11□□□□□ -0.65
LIG1-212ENST00000596549 SAMHD1Q9Y3Z3 626 aaKnown RBP11□□□□□ -0.65
LIG1-212ENST00000596549 A0A1B0GWJ7 208 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 C5orf63A6NC05 138 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 TVP23AA6NH52 213 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 ACOT8O14734 319 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 TCF21O43680 179 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 HLA-DQA2P01906 255 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 GYPBP06028 91 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 CLUP10909 449 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 SELEP16581 610 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 TNFRSF1AP19438 455 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 TNFSF4P23510 183 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 ZMYND11Q15326 602 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 MICAQ29983 383 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 SLC36A3Q495N2 470 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 ADGRG5Q8IZF4 528 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 LINC00471Q8N535 108 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 PROKR2Q8NFJ6 384 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 ZNF420Q8TAQ5 688 aaPredicted RBP10.99□□□□□ -0.65
LIG1-212ENST00000596549 MEGF10Q96KG7 1140 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 PITX2Q99697 317 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 SLC30A2Q9BRI3 323 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 TSSK6Q9BXA6 273 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 DGCR6LQ9BY27 220 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 NMNAT2Q9BZQ4 307 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 C1orf21Q9H246 121 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 REEP1Q9H902 201 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 GCM1Q9NP62 436 aa10.99□□□□□ -0.65
LIG1-212ENST00000596549 DDX28Q9NUL7 540 aaKnown RBP10.99□□□□□ -0.65
LIG1-212ENST00000596549 A0A0G2JMP0 313 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 A0A0X1KG70 313 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 F5H0A9 414 aaPredicted RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 F5H5K5 113 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 M0R135 149 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 DYNC1I1O14576 645 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 VENTXO95231 258 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 ANPEPP15144 967 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 ADRA2CP18825 462 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 ZFP36P26651 326 aaKnown RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 OTX1P32242 354 aaPredicted RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 BTG1P62324 171 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 LCN2P80188 198 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 GK2Q14410 553 aaPredicted RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 SNAI3Q3KNW1 292 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 FAM98BQ52LJ0 330 aaKnown RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 FAHD2BQ6P2I3 314 aaPredicted RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 SHQ1Q6PI26 577 aaKnown RBP10.98□□□□□ -0.65
LIG1-212ENST00000596549 C1QL2Q7Z5L3 287 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 OR4M2Q8NGB6 313 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 OR10G2Q8NGC3 310 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 OR5L1Q8NGL2 311 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 OR2AJ1Q8NGZ0 328 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 OR2T4Q8NH00 348 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 ZNF799Q96GE5 643 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 FAHD2AQ96GK7 314 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 KCNG2Q9UJ96 466 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 METRNQ9UJH8 293 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms