RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ZAR1LA6NP61 321 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 PRR23D1E9PI22 279 aaPredicted RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 LILRA1O75019 489 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 IGHV1-46P01743 117 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 PRR23D2P0DMB1 279 aaPredicted RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 GIFP27352 417 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 GCH1P30793 250 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 OTX1P32242 354 aaPredicted RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 NR4A2P43354 598 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 PDLIM4P50479 330 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 HCCSP53701 268 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 ESRRGP62508 458 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 CCL8P80075 99 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 RIN1Q13671 783 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 SNAPC1Q16533 368 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 TSTQ16762 297 aaKnown RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 C12orf73Q69YU5 71 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 ARL9Q6T311 187 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 CXXC5Q7LFL8 322 aaKnown RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 ERI1Q8IV48 349 aaKnown RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 ZNF786Q8N393 782 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 HAVCR1Q96D42 359 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 SLAMF6Q96DU3 332 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 ATF6BQ99941 703 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 ABHD6Q9BV23 337 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 MSL2Q9HCI7 577 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 S100A14Q9HCY8 104 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 DDX28Q9NUL7 540 aaKnown RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 PURGQ9UJV8 347 aaKnown RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 CACNG2Q9Y698 323 aa9.49□□□□□ -0.89
VRK3-210ENST00000596121 YLPM1P49750 1951 aaKnown RBP9.49□□□□□ -0.89
VRK3-210ENST00000596121 C2CD3Q4AC94 2353 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 LOC390937A0A1W2PQ73 354 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 ANKRD65E5RJM6 399 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 E9PQ18 207 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 H3BSA7 217 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 WNT9BO14905 357 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 SPRY3O43610 288 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 RP2O75695 350 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 HEXAP06865 529 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 CSF3P09919 207 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 SLC25A16P16260 332 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 KITLGP21583 273 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 IGFBP5P24593 272 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 ZNF81P51508 661 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 BLVRAP53004 296 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 SELENOVP59797 346 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 LOXL1Q08397 574 aaPredicted RBP9.48□□□□□ -0.89
VRK3-210ENST00000596121 ECH1Q13011 328 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 APOFQ13790 326 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 EIF2B1Q14232 305 aaKnown RBP9.48□□□□□ -0.89
VRK3-210ENST00000596121 TRIP10Q15642 601 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 SNAI3Q3KNW1 292 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 KLHL12Q53G59 568 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 AADACL4Q5VUY2 407 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 OR2T2Q6IF00 324 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 FBXW12Q6X9E4 464 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 C1orf174Q8IYL3 243 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 TCEANCQ8N8B7 351 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 APOBEC3DQ96AK3 386 aaPredicted RBP9.48□□□□□ -0.89
VRK3-210ENST00000596121 INTS14Q96SY0 518 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 SOX7Q9BT81 388 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 BPESC1Q9GZL8 116 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 CENPMQ9NSP4 180 aa9.48□□□□□ -0.89
VRK3-210ENST00000596121 PRR32B1ATL7 298 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 M0R135 149 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 NDUFS8O00217 210 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 PRODHO43272 600 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 TLX2O43763 284 aaPredicted RBP9.47□□□□□ -0.89
VRK3-210ENST00000596121 TIMM8AO60220 97 aaPredicted RBP9.47□□□□□ -0.89
VRK3-210ENST00000596121 CDC14BO60729 498 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 LCATP04180 440 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 ALPLP05186 524 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 SLC2A1P11166 492 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 RAC2P15153 192 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 PAICSP22234 425 aaKnown RBP9.47□□□□□ -0.89
VRK3-210ENST00000596121 USF1P22415 310 aaPredicted RBP9.47□□□□□ -0.89
VRK3-210ENST00000596121 TUBG1P23258 451 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 IL2RGP31785 369 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 NAA10P41227 235 aaPredicted RBP9.47□□□□□ -0.89
VRK3-210ENST00000596121 RGS6P49758 472 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 PRKXP51817 358 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 CDK5R2Q13319 367 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 GGTLC2Q14390 218 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 GK2Q14410 553 aaPredicted RBP9.47□□□□□ -0.89
VRK3-210ENST00000596121 ZFP1Q6P2D0 407 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 UNQ6126/PRO20091Q6UXV3 157 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 PRSS45Q7RTY3 260 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 OR5AS1Q8N127 324 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 OR6N2Q8NGY6 317 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 TMEM163Q8TC26 289 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 SNX33Q8WV41 574 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 RNF133Q8WVZ7 376 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 RDH5Q92781 318 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 UBE2FQ969M7 185 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 ZNF799Q96GE5 643 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 PLEKHA8Q96JA3 519 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 IL4I1Q96RQ9 567 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 TEAD3Q99594 435 aa9.47□□□□□ -0.89
VRK3-210ENST00000596121 SLC29A1Q99808 456 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms