RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 POU1F1P28069 291 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 ENTPD1P49961 510 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 PCK2Q16822 640 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 RSPO1Q2MKA7 263 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-206ENST00000595974 C1orf146Q5VVC0 180 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 LYPD4Q6UWN0 246 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 COLCA1Q6ZS62 124 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 ATG16L2Q8NAA4 619 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 OR6K6Q8NGW6 343 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 CMBLQ96DG6 245 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 MAP6Q96JE9 813 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 C1QTNF5Q9BXJ0 243 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 MSL2Q9HCI7 577 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 DDX28Q9NUL7 540 aaKnown RBP13.78□□□□□ -0.2
TRIM28-206ENST00000595974 PTTG3PQ9NZH4 202 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 KIF17Q9P2E2 1029 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 LOC100289279A0A1B0GTE1 492 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 CLDN25C9JDP6 229 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 CDC14BO60729 498 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 CLUP10909 449 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 PRKACGP22612 351 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 TNFSF4P23510 183 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 RPS27P42677 84 aaKnown RBP13.77□□□□□ -0.21
TRIM28-206ENST00000595974 TPTEP56180 551 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 CDK5R2Q13319 367 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 HFEQ30201 348 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 TEX30Q5JUR7 227 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 HIPK1Q86Z02 1210 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 OR10S1Q8NGN2 331 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 SPTSSAQ969W0 71 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 UTP4Q969X6 686 aaKnown RBP13.77□□□□□ -0.21
TRIM28-206ENST00000595974 WDR76Q9H967 626 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 NTN4Q9HB63 628 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 CDC42EP3Q9UKI2 254 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 KCNS2Q9ULS6 477 aa13.77□□□□□ -0.21
TRIM28-206ENST00000595974 FAM183AA6NL82 134 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 F5H5K5 113 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 M0R135 149 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 LMX1BO60663 402 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 HMGN1P05114 100 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 SPARCP09486 303 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 PSKH1P11801 424 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 IL2RGP31785 369 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 OTX1P32242 354 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-206ENST00000595974 TNFAIP6P98066 277 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-206ENST00000595974 CDK5Q00535 292 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 GINS1Q14691 196 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 ATP6AP1Q15904 470 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 LINC01590Q5TEZ4 76 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 FAHD1Q6P587 224 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 DCXRQ7Z4W1 244 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF511Q8NB15 262 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 OR5K1Q8NHB7 308 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 CLDND2Q8NHS1 167 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 DUS3LQ96G46 650 aaKnown RBP13.76□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF799Q96GE5 643 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 C1orf159Q96HA4 380 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 SOX7Q9BT81 388 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 TEX12Q9BXU0 123 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 SLC25A19Q9HC21 320 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 LPAR3Q9UBY5 353 aa13.76□□□□□ -0.21
TRIM28-206ENST00000595974 IQCF6A8MYZ5 107 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF878C9JN71 531 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 PRR23D1E9PI22 279 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-206ENST00000595974 SURF4O15260 269 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 CIB2O75838 187 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 GLCEO94923 617 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 PRR23D2P0DMB1 279 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-206ENST00000595974 FCGR1AP12314 374 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 SELEP16581 610 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 CDH15P55291 814 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 SLC3A1Q07837 685 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 MALLQ13021 153 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 CCNIQ14094 377 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 HLXQ14774 488 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-206ENST00000595974 CHRFAM7AQ494W8 412 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 ACSM5Q6NUN0 579 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 Q6ZR03 302 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 PARP8Q8N3A8 854 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 LINC01356Q8N9X3 169 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 OTULINQ96BN8 352 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 TIMD4Q96H15 378 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 INTS14Q96SY0 518 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 COPS4Q9BT78 406 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 HCAR1Q9BXC0 346 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 MED20Q9H944 212 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 MARCH7Q9H992 704 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 PAPOLBQ9NRJ5 636 aaKnown RBP13.75□□□□□ -0.21
TRIM28-206ENST00000595974 AP4S1Q9Y587 144 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 CACNG2Q9Y698 323 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 WNK2Q9Y3S1 2297 aa13.75□□□□□ -0.21
TRIM28-206ENST00000595974 ZNF593O00488 134 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-206ENST00000595974 PRODHO43272 600 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 TGFAP01135 160 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 LCATP04180 440 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 TNFRSF1AP19438 455 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 IGFBP5P24593 272 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 FASP25445 335 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 GSTT1P30711 240 aa13.74□□□□□ -0.21
TRIM28-206ENST00000595974 SLC6A9P48067 706 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms