RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZMYND19Q96E35 227 aaPredicted RBP12.85□□□□□ -0.35
UPF1-202ENST00000594243 COX4I2Q96KJ9 171 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 TEAD3Q99594 435 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 KCNJ15Q99712 375 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 C1QTNF5Q9BXJ0 243 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 GABARAPL3Q9BY60 117 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 REG4Q9BYZ8 158 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 RIBC2Q9H4K1 309 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 CENPMQ9NSP4 180 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 NKIRAS2Q9NYR9 191 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 ZNF878C9JN71 531 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 RNF223E7ERA6 249 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 M0R135 149 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 SMAD7O15105 426 aaKnown RBP12.84□□□□□ -0.35
UPF1-202ENST00000594243 PRKYO43930 277 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 LCATP04180 440 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ALPLP05186 524 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 RAC2P15153 192 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 SLC2A5P22732 501 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 EPHA2P29317 976 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ZNF81P51508 661 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 MMP15P51511 669 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 GRB2P62993 217 aaKnown RBP12.84□□□□□ -0.35
UPF1-202ENST00000594243 MALLQ13021 153 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 PSG7Q13046 419 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ZMAT1Q5H9K5 638 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 LCN1P1Q5VSP4 162 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 DRAM2Q6UX65 266 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 COLCA1Q6ZS62 124 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 BIVMQ86UB2 503 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ZNF786Q8N393 782 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 TCEANCQ8N8B7 351 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ZNF454Q8N9F8 522 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ZNF540Q8NDQ6 660 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 BBS1Q8NFJ9 593 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 TMEM163Q8TC26 289 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ST7LQ8TDW4 575 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 C10orf105Q8TEF2 133 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ZNF799Q96GE5 643 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 DIRC2Q96SL1 478 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 PIMREGQ9BSJ6 248 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 COPS4Q9BT78 406 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ABHD6Q9BV23 337 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 TOR3AQ9H497 397 aa12.84□□□□□ -0.35
UPF1-202ENST00000594243 ROS1P08922 2347 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 IGHV4-30-2A0A087WSY4 118 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 EI24O14681 340 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 TIMM8AO60220 97 aaPredicted RBP12.83□□□□□ -0.36
UPF1-202ENST00000594243 BAG2O95816 211 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 APOC1P02654 83 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 LYNP07948 512 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 PSKH1P11801 424 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 KITLGP21583 273 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 HSD11B1P28845 292 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 OTX1P32242 354 aaPredicted RBP12.83□□□□□ -0.36
UPF1-202ENST00000594243 POLR2IP36954 125 aaKnown RBP12.83□□□□□ -0.36
UPF1-202ENST00000594243 SLC6A9P48067 706 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 CARTPTQ16568 116 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 NXNL2Q5VZ03 156 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 FBXW12Q6X9E4 464 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 MEPCEQ7L2J0 689 aaKnown RBP12.83□□□□□ -0.36
UPF1-202ENST00000594243 NAA40Q86UY6 237 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 CBR4Q8N4T8 237 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 OTOSQ8NHW6 89 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 THEM6Q8WUY1 208 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 POFUT1Q9H488 388 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 SP140LQ9H930 580 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 DECR2Q9NUI1 292 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 PTTG3PQ9NZH4 202 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 PURGQ9UJV8 347 aaKnown RBP12.83□□□□□ -0.36
UPF1-202ENST00000594243 ZDHHC8Q9ULC8 765 aa12.83□□□□□ -0.36
UPF1-202ENST00000594243 SLC22A31A6NKX4 558 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 TPD52L2O43399 206 aaKnown RBP12.82□□□□□ -0.36
UPF1-202ENST00000594243 SELENOFO60613 162 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 SELEP16581 610 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 MAGEB1P43366 347 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 CDC42P60953 191 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 MRPS11P82912 194 aaKnown RBP12.82□□□□□ -0.36
UPF1-202ENST00000594243 FAM209AQ5JX71 171 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 AADACL4Q5VUY2 407 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 ZBTB49Q6ZSB9 765 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 SLC16A9Q7RTY1 509 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.82□□□□□ -0.36
UPF1-202ENST00000594243 GID4Q8IVV7 300 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 RNF133Q8WVZ7 376 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 TRUB1Q8WWH5 349 aaKnown RBP12.82□□□□□ -0.36
UPF1-202ENST00000594243 RDH5Q92781 318 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 EME1Q96AY2 570 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 IL4I1Q96RQ9 567 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 YIPF3Q9GZM5 350 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 LAMP5Q9UJQ1 280 aa12.82□□□□□ -0.36
UPF1-202ENST00000594243 SPRY3O43610 288 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 HPXP02790 462 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 ADH4P08319 380 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 H2BFMP0C1H6 154 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 GIFP27352 417 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 NAA10P41227 235 aaPredicted RBP12.81□□□□□ -0.36
UPF1-202ENST00000594243 NR4A2P43354 598 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 PRKXP51817 358 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 CCL8P80075 99 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms