RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HSMCR30P0CW71 290 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 PPP3CBP16298 524 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 HSD11B1P28845 292 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 PSMB10P40306 273 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 RGS6P49758 472 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 NANOS3P60323 173 aaKnown RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 PLP2Q04941 152 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 MFGE8Q08431 387 aaPredicted RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 ALKBH1Q13686 389 aaKnown RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 CDSNQ15517 529 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 TSTQ16762 297 aaKnown RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 XKRXQ6PP77 449 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 DRAM2Q6UX65 266 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 SEZ6L2Q6UXD5 910 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 GPR141Q7Z602 305 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 CATSPERDQ86XM0 798 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 ZNF808Q8N4W9 903 aaPredicted RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 IL17RDQ8NFM7 739 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 CA5BP1Q8WTZ4 195 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 ITLN2Q8WWU7 325 aaPredicted RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 UFD1Q92890 307 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 ZNF799Q96GE5 643 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 POM121L2Q96KW2 1035 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 PGLYRP3Q96LB9 341 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 DCLRE1CQ96SD1 692 aaKnown RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 DOK1Q99704 481 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 NDUFB11Q9NX14 153 aa14.03□□□□□ -0.16
SS18-211ENST00000578954 SF3B6Q9Y3B4 125 aaKnown RBP14.03□□□□□ -0.16
SS18-211ENST00000578954 CHD6Q8TD26 2715 aa14.02□□□□□ -0.16
SS18-211ENST00000578954 LOC100509620A0A075B734 347 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 IQCMA0A1B0GVH7 501 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 TMEM269A0A1B0GVZ9 245 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 OR4C45A6NMZ5 311 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 LOC110117498-PIK3R3F6TDL0 507 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 ICMTO60725 284 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 RPP14O95059 124 aaKnown RBP14.02□□□□□ -0.17
SS18-211ENST00000578954 CELP19835 753 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 APEX1P27695 318 aaKnown RBP14.02□□□□□ -0.17
SS18-211ENST00000578954 KIR3DL2P43630 455 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 CX3CR1P49238 355 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 TPTEP56180 551 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 SORDQ00796 357 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 TFF3Q07654 80 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 TAB1Q15750 504 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 WDR38Q5JTN6 314 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 COLCA1Q6ZS62 124 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 SATL1Q86VE3 508 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 PRSS35Q8N3Z0 413 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 ZFP41Q8N8Y5 198 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 SLC7A6Q92536 515 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 FRRS1LQ9P0K9 344 aa14.02□□□□□ -0.17
SS18-211ENST00000578954 NUFIP1Q9UHK0 495 aaKnown RBP14.02□□□□□ -0.17
SS18-211ENST00000578954 A0A1W2PR80 420 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 GPRIN2O60269 458 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 DBHP09172 617 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 STOMP27105 288 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 GDI2P50395 445 aaKnown RBP14.01□□□□□ -0.17
SS18-211ENST00000578954 PRKXP51817 358 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 ZNF121P58317 390 aaPredicted RBP14.01□□□□□ -0.17
SS18-211ENST00000578954 HGFACQ04756 655 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 PPA1Q15181 289 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 LIPKQ5VXJ0 399 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 ZNF544Q6NX49 715 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 ZNF283Q8N7M2 679 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 MUCL1Q96DR8 90 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 LRRC46Q96FV0 321 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 KCNJ16Q9NPI9 418 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 BATF3Q9NR55 127 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 OR52A1Q9UKL2 312 aa14.01□□□□□ -0.17
SS18-211ENST00000578954 PRR14LQ5THK1 2151 aa14□□□□□ -0.17
SS18-211ENST00000578954 TRBV2A0A0J9YWF9 115 aa14□□□□□ -0.17
SS18-211ENST00000578954 NKX2-6A6NCS4 301 aa14□□□□□ -0.17
SS18-211ENST00000578954 TMEM212A6NML5 194 aa14□□□□□ -0.17
SS18-211ENST00000578954 F5H5K5 113 aa14□□□□□ -0.17
SS18-211ENST00000578954 J3QW42 95 aa14□□□□□ -0.17
SS18-211ENST00000578954 ZG16O60844 167 aa14□□□□□ -0.17
SS18-211ENST00000578954 ZFPL1O95159 310 aa14□□□□□ -0.17
SS18-211ENST00000578954 CLDN14O95500 239 aa14□□□□□ -0.17
SS18-211ENST00000578954 CELA3BP08861 270 aa14□□□□□ -0.17
SS18-211ENST00000578954 CD36P16671 472 aa14□□□□□ -0.17
SS18-211ENST00000578954 GABRA5P31644 462 aa14□□□□□ -0.17
SS18-211ENST00000578954 APLNRP35414 380 aa14□□□□□ -0.17
SS18-211ENST00000578954 IDH3GP51553 393 aaPredicted RBP14□□□□□ -0.17
SS18-211ENST00000578954 GALK2Q01415 458 aa14□□□□□ -0.17
SS18-211ENST00000578954 CD200R1LQ6Q8B3 271 aa14□□□□□ -0.17
SS18-211ENST00000578954 ARL9Q6T311 187 aa14□□□□□ -0.17
SS18-211ENST00000578954 C22orf34Q6ZV56 151 aa14□□□□□ -0.17
SS18-211ENST00000578954 MYPOPQ86VE0 399 aaPredicted RBP14□□□□□ -0.17
SS18-211ENST00000578954 ELMOD2Q8IZ81 293 aa14□□□□□ -0.17
SS18-211ENST00000578954 SLC30A7Q8NEW0 376 aa14□□□□□ -0.17
SS18-211ENST00000578954 MS4A3Q96HJ5 214 aa14□□□□□ -0.17
SS18-211ENST00000578954 C1QTNF5Q9BXJ0 243 aa14□□□□□ -0.17
SS18-211ENST00000578954 PBOV1Q9GZY1 135 aa14□□□□□ -0.17
SS18-211ENST00000578954 RBM38Q9H0Z9 239 aaKnown RBP14□□□□□ -0.17
SS18-211ENST00000578954 SMIM31A0A1B0GVY4 71 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 DPPA5A6NC42 116 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 A6NHS1 94 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 AGFG2O95081 481 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 IGLV3-1P01715 115 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 TTRP02766 147 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms