RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CAPZA1P52907 286 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 TAS2R19P59542 299 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 TSPAN5P62079 268 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 IL11RAQ14626 422 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 PCOLCEQ15113 449 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 ZNF239Q16600 458 aaKnown RBP8.96□□□□□ -0.98
VPS53-220ENST00000576149 OR10K2Q6IF99 312 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 DBX2Q6ZNG2 339 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 TMEM229BQ8NBD8 167 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 IFI44Q8TCB0 444 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 OR5B2Q96R09 309 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 CITED4Q96RK1 184 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 GAL3ST1Q99999 423 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 DPCDQ9BVM2 203 aaPredicted RBP8.96□□□□□ -0.98
VPS53-220ENST00000576149 WNT5BQ9H1J7 359 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 SLCO5A1Q9H2Y9 848 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 GAREM1Q9H706 876 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 LHFPL6Q9Y693 200 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 CHCHD2Q9Y6H1 151 aaPredicted RBP8.96□□□□□ -0.98
VPS53-220ENST00000576149 A0A1W2PPL8 197 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 PLSCR5A0PG75 271 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 TNFRSF10AO00220 468 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 SYT7O43581 403 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 GDF9O60383 454 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 FCER2P06734 321 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 ZNF28P17035 718 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 RAB6AP20340 208 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 ADH6P28332 368 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 HSD11B1P28845 292 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 BDKRB2P30411 391 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 EIF1P41567 113 aaKnown RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 PMPCAQ10713 525 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 MFAP5Q13361 173 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 SNTA1Q13424 505 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 MOGAT2Q3SYC2 334 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 SLC25A47Q6Q0C1 308 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 CFAP77Q6ZQR2 320 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 GPAT4Q86UL3 456 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 OR4K17Q8NGC6 315 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 OR6X1Q8NH79 312 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 SLC25A43Q8WUT9 341 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 OXGR1Q96P68 337 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 CLEC4MQ9H2X3 399 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 PTGES2Q9H7Z7 377 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 GDF2Q9UK05 429 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 NXT1Q9UKK6 140 aaKnown RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 KIF26BQ2KJY2 2108 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 LINC00862A6NCI5 91 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 LEUTXA8MZ59 168 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 TP53I11O14683 189 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 YKT6O15498 198 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 RAB3DO95716 219 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 ITGB2P05107 769 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 FKBP2P26885 142 aaKnown RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 RHOUQ7L0Q8 258 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 HDDC2Q7Z4H3 204 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 CDH26Q8IXH8 852 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 OR8H3Q8N146 312 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 EDAQ92838 391 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 ADAT3Q96EY9 351 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 WDR89Q96FK6 387 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 TMPRSS13Q9BYE2 586 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 ALX4Q9H161 411 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 CNTD2Q9H8S5 307 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 SEC61A2Q9H9S3 476 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 MYEF2Q9P2K5 600 aaKnown RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 ZNF107Q9UII5 783 aaPredicted RBP8.95□□□□□ -0.98
VPS53-220ENST00000576149 RAB22AQ9UL26 194 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 HDGFL3Q9Y3E1 203 aa8.95□□□□□ -0.98
VPS53-220ENST00000576149 LOC102725191A0A1B0GVB3 256 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ZNF878C9JN71 531 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 RAMP1O60894 148 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 SNAPC5O75971 98 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 IFNA7P01567 189 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ZNF43P17038 809 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ATF4P18848 351 aaPredicted RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 SFTPDP35247 375 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 CLDN6P56747 220 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 EXOSC2Q13868 293 aaKnown RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 GRK1Q15835 563 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 HIST3H3Q16695 136 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 TMEM176BQ3YBM2 270 aaPredicted RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 PRAMEF20Q5VT98 475 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ZNF529Q6P280 563 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 WDR5BQ86VZ2 330 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 MUC20Q8N307 709 aaPredicted RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 PAQR4Q8N4S7 273 aaPredicted RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR1M1Q8NGA1 313 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR52N4Q8NGI2 321 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR1J2Q8NGS2 313 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ZBTB8AQ96BR9 441 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 EXO5Q9H790 373 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ZMAT3Q9HA38 289 aaKnown RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 TMEM138Q9NPI0 162 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 SH3BGRL2Q9UJC5 107 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 IGHV1-45A0A0A0MS14 117 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 A0A1B0GTI1 187 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 METTL21EPA6NDL7 271 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 AQP7P3A6NL99 342 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 M0R233 179 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms