RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KCTD14Q9BQ13 255 aaPredicted RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 CDADC1Q9BWV3 514 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 C1orf21Q9H246 121 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 MMADHCQ9H3L0 296 aaPredicted RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 MAGEL2Q9UJ55 1249 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 VPREB3Q9UKI3 123 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 SH3GLB1Q9Y371 365 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 A0A1W2PRG6 482 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 M0R3H8 397 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 CXCR6O00574 342 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 NME4O00746 187 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 GSTA4O15217 222 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 PAHP00439 452 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 MT-ND1P03886 318 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 IFNW1P05000 195 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 FBP1P09467 338 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 TSPAN19P0C672 248 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 PGA4P0DJD7 388 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 PGA3P0DJD8 388 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 UMPSP11172 480 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 GSK3BP49841 420 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 NPY4RP50391 375 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 SMIM11AP58511 58 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 ZNF74Q16587 644 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 IFI44LQ53G44 452 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 KLHL22Q53GT1 634 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 C11orf88Q6PI97 169 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 NHLRC1Q6VVB1 395 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 CYP4Z1Q86W10 505 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 OFCC1Q8IZS5 231 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 CCDC197Q8NCU1 140 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 NPEPL1Q8NDH3 523 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 FNDC8Q8TC99 324 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 DACT3Q96B18 629 aaPredicted RBP9.18□□□□□ -0.94
VPS53-207ENST00000570510 CMBLQ96DG6 245 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 ZNF347Q96SE7 839 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 FAM107BQ9H098 131 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 PPA2Q9H2U2 334 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 TANC2Q9HCD6 1990 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 NANSQ9NR45 359 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 DCAF13Q9NV06 445 aaKnown RBP9.18□□□□□ -0.94
VPS53-207ENST00000570510 ERVK-18Q9QC07 812 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 FBLN5Q9UBX5 448 aa9.18□□□□□ -0.94
VPS53-207ENST00000570510 NOTCH3Q9UM47 2321 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 IGHV3-64DA0A0J9YX35 117 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 LYPD3O95274 346 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 CH25HO95992 272 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 OPN1SWP03999 348 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 ASAH2BP0C7U1 165 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 VSIG10L2P0DP72 767 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 CD33P20138 364 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 CALB2P22676 271 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 TUBG1P23258 451 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 CDAP32320 146 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 SLC9A3P48764 834 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 TAS2R41P59536 307 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 PCBD1P61457 104 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 MRPS34P82930 218 aaKnown RBP9.17□□□□□ -0.94
VPS53-207ENST00000570510 PSG4Q00888 419 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 ZNF404Q494X3 552 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 LRRC23Q53EV4 343 aaPredicted RBP9.17□□□□□ -0.94
VPS53-207ENST00000570510 DCDC5Q6ZRR9 648 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 LYG1Q8N1E2 194 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 OR4F17Q8NGA8 305 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 OR2T6Q8NHC8 308 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 OR4F4Q96R69 305 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 TBX15Q96SF7 602 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 NDEL1Q9GZM8 345 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 TUBG2Q9NRH3 451 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 CD300AQ9UGN4 299 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 RIMS3Q9UJD0 308 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 SLC7A7Q9UM01 511 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 FOXJ3Q9UPW0 622 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 MED31Q9Y3C7 131 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 TIMM10BQ9Y5J6 103 aa9.17□□□□□ -0.94
VPS53-207ENST00000570510 A0A1W2PRQ8 180 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 CPSF4LA6NMK7 179 aaKnown RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 C22orf46C9J442 243 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 RNASEK-C17orf49H0YIS7 233 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 BLOC1S5-TXNDC5H3BN57 136 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 RHCEP18577 417 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 EEF1B2P24534 225 aaKnown RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 ARF6P62330 175 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 DGCR6Q14129 220 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 GK3PQ14409 553 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 TRAM2Q15035 370 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 KCNJ8Q15842 424 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 GLYATQ6IB77 296 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 Q6ZR03 302 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 C1orf122Q6ZSJ8 110 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 MOGAT3Q86VF5 341 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR5AS1Q8N127 324 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 KLHDC1Q8N7A1 406 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 NOXO1Q8NFA2 376 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR10AD1Q8NGE0 317 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR4D11Q8NGI4 311 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR4C13Q8NGP0 309 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR13G1Q8NGZ3 307 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR5R1Q8NH85 324 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 TMEM239Q8WW34 195 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms