RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TLE4Q04727 773 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 MFGE8Q08431 387 aaPredicted RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 POU4F2Q12837 409 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 TNK1Q13470 666 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 IRF3Q14653 427 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 SNAI3Q3KNW1 292 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 ZNF672Q499Z4 452 aaPredicted RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 ZNF322Q6U7Q0 402 aaPredicted RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 PLEKHG7Q6ZR37 379 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 NUP37Q8NFH4 326 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 OR2AJ1Q8NGZ0 328 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 OR2T27Q8NH04 317 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 THEM6Q8WUY1 208 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 NRGNQ92686 78 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 PPP1R14AQ96A00 147 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 MARS2Q96GW9 593 aaKnown RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 CNBD2Q96M20 576 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 Q96MT0 163 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 MNTQ99583 582 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 KCNJ15Q99712 375 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 ISG20L2Q9H9L3 353 aaKnown RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 SLC24A3Q9HC58 644 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 G6PC2Q9NQR9 355 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 FAM206AQ9NX38 181 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 ERVK13-1Q9NX77 482 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 CLEC2DQ9UHP7 191 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 DIMT1Q9UNQ2 313 aaKnown RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 STARD10Q9Y365 291 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 RPL36Q9Y3U8 105 aaKnown RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 PRRC2AP48634 2157 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 IGLV3-9A0A075B6K5 115 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 IQCMA0A1B0GVH7 501 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 E9PI62 339 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 M0R135 149 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CASKO14936 926 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 IGLV3-1P01715 115 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CRYAAP02489 173 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CCDC159P0C7I6 412 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 FAM157BP0CG42 384 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 SLC2A1P11166 492 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 DCTDP32321 178 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 THBS4P35443 961 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 MPV17P39210 176 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 GDI2P50395 445 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 PRKXP51817 358 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 UCP2P55851 309 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 OR12D2P58182 307 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 NANOS3P60323 173 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 PSMA6P60900 246 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 PLP2Q04941 152 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ST3GAL4Q11206 333 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ECH1Q13011 328 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 SNTB2Q13425 540 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 GALEQ14376 348 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ADIPOQQ15848 244 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 TBC1D28Q2M2D7 210 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ALKBH6Q3KRA9 238 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 TP53I3Q53FA7 332 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 XAF1Q6GPH4 301 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 C11orf71Q6IPW1 123 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 KRT80Q6KB66 452 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 DEGS2Q6QHC5 323 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 LHFPL3Q86UP9 236 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 LRP11Q86VZ4 500 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ZNF679Q8IYX0 411 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ALDH16A1Q8IZ83 802 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ACBD7Q8N6N7 88 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 IL17RDQ8NFM7 739 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 BPIFB6Q8NFQ5 453 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 OR10H4Q8NGA5 316 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 RPS4Y2Q8TD47 263 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 RORBQ92753 470 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 PELI1Q96FA3 418 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ZNF799Q96GE5 643 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 C4orf45Q96LM5 186 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 DOK1Q99704 481 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 SOX7Q9BT81 388 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CDADC1Q9BWV3 514 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 KCNN2Q9H2S1 579 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ZNF442Q9H7R0 627 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 ELOVL3Q9HB03 270 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 NGBQ9NPG2 151 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CA10Q9NS85 328 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CENPMQ9NSP4 180 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 TBCCD1Q9NVR7 557 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 CNOT2Q9NZN8 540 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 MYEF2Q9P2K5 600 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 LAMP5Q9UJQ1 280 aa7.98□□□□□ -1.13
VPS35-211ENST00000569950 LSM2Q9Y333 95 aaKnown RBP7.98□□□□□ -1.13
VPS35-211ENST00000569950 F5H5K5 113 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 HS3ST1O14792 307 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 LILRA1O75019 489 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 TMCC2O75069 709 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 CLPTM1O96005 669 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 CDK1P06493 297 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 SOD3P08294 240 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 ZNF250P15622 560 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 DCKP27707 260 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 APLNRP35414 380 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 GLRXP35754 106 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms