RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GZMKP49863 264 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 CHN2P52757 468 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 ECH1Q13011 328 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 CDK5R2Q13319 367 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 PCK2Q16822 640 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 LINC01590Q5TEZ4 76 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 Q6ZR03 302 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 COLCA1Q6ZS62 124 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 USP51Q70EK9 711 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 APOBEC3DQ96AK3 386 aaPredicted RBP12.77□□□□□ -0.37
VPS39-210ENST00000568357 ATF6BQ99941 703 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 PTTG3PQ9NZH4 202 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 KCNG2Q9UJ96 466 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 COMMD3-BMI1R4GMX3 469 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 IGHV1-69-2A0A0G2JMI3 117 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 LOC100289279A0A1B0GTE1 492 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 J3QW42 95 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 ZNF593O00488 134 aaPredicted RBP12.76□□□□□ -0.37
VPS39-210ENST00000568357 TPD52L2O43399 206 aaKnown RBP12.76□□□□□ -0.37
VPS39-210ENST00000568357 PPIHO43447 177 aaKnown RBP12.76□□□□□ -0.37
VPS39-210ENST00000568357 WIPF1O43516 503 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 ADH4P08319 380 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 ACSM4P0C7M7 580 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 RAC2P15153 192 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 ZNF3P17036 446 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 FMO3P31513 532 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 RGS6P49758 472 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 CDK5Q00535 292 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 HNRNPA0Q13151 305 aaKnown RBP12.76□□□□□ -0.37
VPS39-210ENST00000568357 CCNIQ14094 377 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 FAM209AQ5JX71 171 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 C1orf146Q5VVC0 180 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 SLC27A4Q6P1M0 643 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 SHQ1Q6PI26 577 aaKnown RBP12.76□□□□□ -0.37
VPS39-210ENST00000568357 HIPK1Q86Z02 1210 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 OR5L1Q8NGL2 311 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 HPS1Q92902 700 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 NRBF2Q96F24 287 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 COG8Q96MW5 612 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 C1QTNF5Q9BXJ0 243 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 ZNF556Q9HAH1 456 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 SAP30LQ9HAJ7 183 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 TREM2Q9NZC2 230 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 CGGBP1Q9UFW8 167 aaPredicted RBP12.76□□□□□ -0.37
VPS39-210ENST00000568357 ZDHHC8Q9ULC8 765 aa12.76□□□□□ -0.37
VPS39-210ENST00000568357 DEAF1O75398 565 aaPredicted RBP12.75□□□□□ -0.37
VPS39-210ENST00000568357 TGFAP01135 160 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 RBMXP38159 391 aaKnown RBP12.75□□□□□ -0.37
VPS39-210ENST00000568357 ENTPD1P49961 510 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 DAPP51397 102 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 TEX30Q5JUR7 227 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 TMEM236Q5W0B7 351 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 OR2T2Q6IF00 324 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 FAHD1Q6P587 224 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 FBXW12Q6X9E4 464 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 DCXRQ7Z4W1 244 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 ATG16L2Q8NAA4 619 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 OR6K6Q8NGW6 343 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 NARFLQ9H6Q4 476 aa12.75□□□□□ -0.37
VPS39-210ENST00000568357 C5orf63A6NC05 138 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 SURF4O15260 269 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 LMX1BO60663 402 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 LCATP04180 440 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 CD55P08174 381 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 SPARCP09486 303 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 ANOS1P23352 680 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 PRSS12P56730 875 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 ATP6AP1Q15904 470 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 HFEQ30201 348 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 AVPI1Q5T686 147 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 FAM166AQ6J272 317 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 PLBD1Q6P4A8 553 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 ASRGL1Q7L266 308 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 OR5AS1Q8N127 324 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 OR2Z1Q8NG97 314 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 CLDND2Q8NHS1 167 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 CCL17Q92583 94 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 OTULINQ96BN8 352 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 DUS3LQ96G46 650 aaKnown RBP12.74□□□□□ -0.37
VPS39-210ENST00000568357 C1orf159Q96HA4 380 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 DIRC2Q96SL1 478 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 EGLN1Q9GZT9 426 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 OR51V1Q9H2C8 321 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 DDX28Q9NUL7 540 aaKnown RBP12.74□□□□□ -0.37
VPS39-210ENST00000568357 AP4S1Q9Y587 144 aa12.74□□□□□ -0.37
VPS39-210ENST00000568357 SONP18583 2426 aaKnown RBP12.74□□□□□ -0.37
VPS39-210ENST00000568357 YLPM1P49750 1951 aaKnown RBP12.73□□□□□ -0.37
VPS39-210ENST00000568357 M0R135 149 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 HMGN1P05114 100 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 GSTT1P30711 240 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 BLVRAP53004 296 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 TPTEP56180 551 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 LMO4P61968 165 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 TNFAIP6P98066 277 aaPredicted RBP12.73□□□□□ -0.37
VPS39-210ENST00000568357 MVKQ03426 396 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 GK2Q14410 553 aaPredicted RBP12.73□□□□□ -0.37
VPS39-210ENST00000568357 ZMAT1Q5H9K5 638 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 CPOQ8IVL8 374 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 OR5K1Q8NHB7 308 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 ST7LQ8TDW4 575 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms