RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 B3GALT5-AS1P59052 145 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 RAC1P63000 192 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 NDUFA5Q16718 116 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 LUZP2Q86TE4 346 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 OR52N4Q8NGI2 321 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 SLC39A7Q92504 469 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 SPRY4Q9C004 299 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 CNTD2Q9H8S5 307 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 STMN3Q9NZ72 180 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 FARSAQ9Y285 508 aaKnown RBP17.93■□□□□ 0.46
CLN3-230ENST00000568076 TGM6O95932 706 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 HPP00738 406 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 CSF1P09603 554 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 ZNF121P58317 390 aaPredicted RBP17.93■□□□□ 0.46
CLN3-230ENST00000568076 SNRPD2P62316 118 aaKnown RBP17.93■□□□□ 0.46
CLN3-230ENST00000568076 SSPNQ14714 243 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 POU4F3Q15319 338 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 SEZ6L2Q6UXD5 910 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 GPX8Q8TED1 209 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 TMEM54Q969K7 222 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 HYLS1Q96M11 299 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 TAAR9Q96RI9 348 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 PIGQQ9BRB3 760 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 UTP23Q9BRU9 249 aaKnown RBP17.93■□□□□ 0.46
CLN3-230ENST00000568076 ZNF416Q9BWM5 594 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 SRXN1Q9BYN0 137 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 EMC3Q9P0I2 261 aa17.93■□□□□ 0.46
CLN3-230ENST00000568076 MEIKINA0A087WXM9 373 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 A0A1B0GUH1 482 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 C9orf172C9J069 976 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 SSNA1O43805 119 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 PRAF2O60831 178 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 FCER2P06734 321 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 ICAM2P13598 275 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 ENPP1P22413 925 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 CSNK1A1P48729 337 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 TAF13Q15543 124 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 HYAL4Q2M3T9 481 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 ZNF528Q3MIS6 628 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 MOGAT2Q3SYC2 334 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 H3F3CQ6NXT2 135 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 ZNF529Q6P280 563 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 ZIC4Q8N9L1 334 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 OR1M1Q8NGA1 313 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 OR9K2Q8NGE7 335 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 OR8B12Q8NGG6 310 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 SORCS2Q96PQ0 1159 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 SEC22CQ9BRL7 303 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 MOB1AQ9H8S9 216 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 TAS2R8Q9NYW2 309 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 GPR179Q6PRD1 2367 aa17.92■□□□□ 0.46
CLN3-230ENST00000568076 A0A1W2PNU3 283 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 VAMP5O95183 116 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 WDPCPO95876 746 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 P04436 131 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 ANXA7P20073 488 aaKnown RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 CSNK2A1P68400 391 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 SGCAQ16586 387 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 C10orf128Q5T292 105 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 SLC25A25Q6KCM7 469 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 ZNF627Q7L945 461 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 TMEM123Q8N131 208 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 C9orf62Q8N4C0 152 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 OR11H4Q8NGC9 324 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 OR6N1Q8NGY5 312 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 DEDD2Q8WXF8 326 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 FOXRED1Q96CU9 486 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 SEH1LQ96EE3 360 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 STRADBQ9C0K7 418 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 TMEM138Q9NPI0 162 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 ELF5Q9UKW6 265 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 A0A1B0GVI7 797 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 NPIPA2E9PIF3 369 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 NPIPA3F8WFD2 350 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 RFPL3SP0C7P2 107 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 MECP2P51608 486 aaKnown RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 ZNF133P52736 654 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 CSRP2Q16527 193 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 ACER2Q5QJU3 275 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 METTL11BQ5VVY1 283 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 GLDNQ6ZMI3 551 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 YRDCQ86U90 279 aaKnown RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 CLEC1AQ8NC01 280 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 ZPBPQ9BS86 351 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 NAA11Q9BSU3 229 aaPredicted RBP17.91■□□□□ 0.46
CLN3-230ENST00000568076 GON7Q9BXV9 100 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 TMEM165Q9HC07 324 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 P4HTMQ9NXG6 502 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 HSPB11Q9Y547 144 aa17.91■□□□□ 0.46
CLN3-230ENST00000568076 LRRC3CA6NJW4 275 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 ZNF780AO75290 641 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 JMJD7P0C870 316 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 GTF2F2P13984 249 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 CD59P13987 128 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 SRD5A2P31213 254 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 CX3CR1P49238 355 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 SELENOPP49908 381 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 ANGPT1Q15389 498 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 PLA2G2CQ5R387 149 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 RNF144BQ7Z419 303 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms