RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 RNF223E7ERA6 249 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 HPXP02790 462 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 KITLGP21583 273 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 MAGEB1P43366 347 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 RGS6P49758 472 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 ALDH3A2P51648 485 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 KRTAP1-1Q07627 177 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 PSG7Q13046 419 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 HLXQ14774 488 aaPredicted RBP8.36□□□□□ -1.07
CLK3-220ENST00000567992 NKPD1Q17RQ9 610 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 ZNF718Q3SXZ3 478 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 KLHL12Q53G59 568 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 SLC35D3Q5M8T2 416 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 AADACL4Q5VUY2 407 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 ARL9Q6T311 187 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 UNQ6126/PRO20091Q6UXV3 157 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 DPY19L4Q7Z388 723 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 BCDIN3DQ7Z5W3 292 aaKnown RBP8.36□□□□□ -1.07
CLK3-220ENST00000567992 NAA40Q86UY6 237 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 ERI1Q8IV48 349 aaKnown RBP8.36□□□□□ -1.07
CLK3-220ENST00000567992 CBR4Q8N4T8 237 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 TCEANCQ8N8B7 351 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 OR6N2Q8NGY6 317 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 TMEM163Q8TC26 289 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 RNF133Q8WVZ7 376 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 NEU4Q8WWR8 484 aaPredicted RBP8.36□□□□□ -1.07
CLK3-220ENST00000567992 APOBEC3DQ96AK3 386 aaPredicted RBP8.36□□□□□ -1.07
CLK3-220ENST00000567992 SLAMF6Q96DU3 332 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 PLEKHA8Q96JA3 519 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 SMR3AQ99954 134 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 MS4A5Q9H3V2 200 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 RIBC2Q9H4K1 309 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 GSX1Q9H4S2 264 aaPredicted RBP8.36□□□□□ -1.07
CLK3-220ENST00000567992 SLCO1C1Q9NYB5 712 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 ENOPH1Q9UHY7 261 aa8.36□□□□□ -1.07
CLK3-220ENST00000567992 YLPM1P49750 1951 aaKnown RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 PRR32B1ATL7 298 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 ZNF878C9JN71 531 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 F5H5K5 113 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 M0R135 149 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 SMAD7O15105 426 aaKnown RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 IGHV1-46P01743 117 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 INHBBP09529 407 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 CSF3P09919 207 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 DAOP14920 347 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 TUBG1P23258 451 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 GCH1P30793 250 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 OPRL1P41146 370 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 NAA10P41227 235 aaPredicted RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 GTF2A1P52655 376 aaPredicted RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 DSCR9P59020 149 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 APOFQ13790 326 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 EIF2B1Q14232 305 aaKnown RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 GGTLC2Q14390 218 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 CLEC2AQ6UVW9 174 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 FBXW12Q6X9E4 464 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 Q6ZR03 302 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 SPATC1Q76KD6 591 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 MAPK1IP1LQ8NDC0 245 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 OTOSQ8NHW6 89 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 FAM168AQ92567 244 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 YIPF5Q969M3 257 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 ZNF799Q96GE5 643 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 MBOAT4Q96T53 435 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 SLC29A1Q99808 456 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 ABHD6Q9BV23 337 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 TEX12Q9BXU0 123 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 REG4Q9BYZ8 158 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 PRRG3Q9BZD7 231 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 MYOZ1Q9NP98 299 aaPredicted RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 TUBG2Q9NRH3 451 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 PTTG3PQ9NZH4 202 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 PURGQ9UJV8 347 aaKnown RBP8.35□□□□□ -1.07
CLK3-220ENST00000567992 CSPG4Q6UVK1 2322 aa8.35□□□□□ -1.07
CLK3-220ENST00000567992 LOC390937A0A1W2PQ73 354 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 LYNX1G3V0Z9 82 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 NDUFS8O00217 210 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 TLX2O43763 284 aaPredicted RBP8.34□□□□□ -1.07
CLK3-220ENST00000567992 LILRA1O75019 489 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 RP2O75695 350 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 ADH4P08319 380 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 MRPL3P09001 348 aaKnown RBP8.34□□□□□ -1.07
CLK3-220ENST00000567992 LYNX1P0DP58 116 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 RAC2P15153 192 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 GIFP27352 417 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 PDLIM4P50479 330 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 TPTEP56180 551 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 PRSS12P56730 875 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 SELENOVP59797 346 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 RIN1Q13671 783 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 GK2Q14410 553 aaPredicted RBP8.34□□□□□ -1.07
CLK3-220ENST00000567992 SNAI3Q3KNW1 292 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 SPRNQ5BIV9 151 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 NXNL2Q5VZ03 156 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 DRAM2Q6UX65 266 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 PRSS45Q7RTY3 260 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 BIVMQ86UB2 503 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 ZNF786Q8N393 782 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 RFLNBQ8N5W9 214 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 UBASH3BQ8TF42 649 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms