RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DNAJC9-AS1A6NH13 148 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 IQCF6A8MYZ5 107 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 H0YL77 283 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 ARPC3O15145 178 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 MEP1BQ16820 701 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 GLYATQ6IB77 296 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 C9orf139Q6ZV77 190 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 OR6V1Q8N148 313 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 FAM86B1Q8N7N1 296 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 ZNF420Q8TAQ5 688 aaPredicted RBP14.34□□□□□ -0.11
CLN3-216ENST00000565316 C1QTNF5Q9BXJ0 243 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 KRCC1Q9NPI7 259 aaPredicted RBP14.34□□□□□ -0.11
CLN3-216ENST00000565316 SAMD4AQ9UPU9 718 aaKnown RBP14.34□□□□□ -0.11
CLN3-216ENST00000565316 POLR1DQ9Y2S0 133 aa14.34□□□□□ -0.11
CLN3-216ENST00000565316 CLDN34H7C241 214 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 DIRAS1O95057 198 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 PPP1R3DO95685 299 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 SEMG1P04279 462 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 SELEP16581 610 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 GATA4P43694 442 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 RFX4Q33E94 735 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 LRRN1Q6UXK5 716 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 KLBQ86Z14 1044 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 SLC26A10Q8NG04 563 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 OR52J3Q8NH60 311 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 CMTM5Q96DZ9 223 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 ERMAPQ96PL5 475 aaPredicted RBP14.33□□□□□ -0.12
CLN3-216ENST00000565316 SSBP3Q9BWW4 388 aaPredicted RBP14.33□□□□□ -0.12
CLN3-216ENST00000565316 MYLK2Q9H1R3 596 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 GORASP2Q9H8Y8 452 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 MIOXQ9UGB7 285 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 PCDHGB1Q9Y5G3 927 aa14.33□□□□□ -0.12
CLN3-216ENST00000565316 IGHV2-70DA0A0C4DH43 119 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 F5H5P2 479 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 WIPF1O43516 503 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 ZNF205O95201 554 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 CYB5R3P00387 301 aaPredicted RBP14.32□□□□□ -0.12
CLN3-216ENST00000565316 RNASE1P07998 156 aaKnown RBP14.32□□□□□ -0.12
CLN3-216ENST00000565316 RPS2P15880 293 aaKnown RBP14.32□□□□□ -0.12
CLN3-216ENST00000565316 MDH1P40925 334 aaKnown RBP14.32□□□□□ -0.12
CLN3-216ENST00000565316 PMELP40967 661 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 CENPAP49450 140 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 SMIM11AP58511 58 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 ECH1Q13011 328 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 BAMBIQ13145 260 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 ZNF404Q494X3 552 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 PRR31Q5SQ13 230 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 SLC18B1Q6NT16 456 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 LEG1Q6P5S2 330 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 CORO6Q6QEF8 472 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 SHISA2Q6UWI4 295 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 ZBTB46Q86UZ6 589 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 MOGAT3Q86VF5 341 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 OR52E2Q8NGJ4 325 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 FANK1Q8TC84 345 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 UPRTQ96BW1 309 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 NMNAT3Q96T66 252 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 TMEM246Q9BRR3 403 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 SRA1Q9HD15 236 aaKnown RBP14.32□□□□□ -0.12
CLN3-216ENST00000565316 SPAG4Q9NPE6 437 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 TMEM100Q9NV29 134 aa14.32□□□□□ -0.12
CLN3-216ENST00000565316 LRRC30A6NM36 301 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 TMPRSS2O15393 492 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 ACSM4P0C7M7 580 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 IGHV4-38-2P0DP08 117 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 HIST1H1CP16403 213 aaKnown RBP14.31□□□□□ -0.12
CLN3-216ENST00000565316 FPR3P25089 353 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 PRDX6P30041 224 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 SLC6A6P31641 620 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 GK2Q14410 553 aaPredicted RBP14.31□□□□□ -0.12
CLN3-216ENST00000565316 KRT72Q14CN4 511 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 SLC36A3Q495N2 470 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 BTNL3Q6UXE8 466 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 CFAP77Q6ZQR2 320 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.31□□□□□ -0.12
CLN3-216ENST00000565316 JAZF1Q86VZ6 243 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 C1orf87Q8N0U7 546 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 CELF2-AS1Q8N7Q2 184 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 BHLHE23Q8NDY6 225 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 Q8TCH9 128 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 RAB40AQ8WXH6 277 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 NEIL1Q96FI4 390 aaPredicted RBP14.31□□□□□ -0.12
CLN3-216ENST00000565316 DUX5Q96PT3 197 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 HCAR1Q9BXC0 346 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 OR52D1Q9H346 318 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 WDR76Q9H967 626 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 CYB5R1Q9UHQ9 305 aa14.31□□□□□ -0.12
CLN3-216ENST00000565316 KIR2DS1A0A191URI9 304 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 IDH3BO43837 385 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 PLATP00750 562 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 RENP00797 406 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 GGT2P36268 569 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 GNB2P62879 340 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 MAB21L1Q13394 359 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 SLC9A3R2Q15599 337 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 PARP8Q8N3A8 854 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 OR4K13Q8NH42 304 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 ERGIC1Q969X5 290 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 PYURFQ96I23 114 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 PLEKHA8Q96JA3 519 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms