RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KIF26AQ9ULI4 1882 aaPredicted RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 PRR14LQ5THK1 2151 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 IGLV3-12A0A075B6K2 115 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 BET1O15155 118 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 ANGPTL7O43827 346 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 SCGB1D2O95969 90 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 PAHP00439 452 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 PCSK6P29122 969 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 MLLT11Q13015 90 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 TBCEQ15813 527 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 RNASE10Q5GAN6 216 aaKnown RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 EXOSC6Q5RKV6 272 aaKnown RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 ZNF610Q8N9Z0 462 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 BORCS5Q969J3 196 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 PLPPR2Q96GM1 343 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 MS4A3Q96HJ5 214 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 TMEFF2Q9UIK5 374 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 TRAPPC2LQ9UL33 140 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 HIF3AQ9Y2N7 669 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 MRPS28Q9Y2Q9 187 aaKnown RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 CHCHD2Q9Y6H1 151 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 MYO9AB2RTY4 2548 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 USP9YO00507 2555 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 SETD2Q9BYW2 2564 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 OR6C6A6NF89 314 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 CTDSP2O14595 271 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 ARPC3O15145 178 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 TO15178 435 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 KNG1P01042 644 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 CYC1P08574 325 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 STOMP27105 288 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 HLA-DMAP28067 261 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 IGLV3-21P80748 117 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 AQP6Q13520 282 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 PDCD1Q15116 288 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 C1orf185Q5T7R7 199 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 FHL5Q5TD97 284 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 FBXW9Q5XUX1 488 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 Q8N402 240 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 GCDHQ92947 438 aaPredicted RBP8.21□□□□□ -1.1
VPS39-205ENST00000562258 VOPP1Q96AW1 172 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 CREB3L1Q96BA8 519 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 ZNF285Q96NJ3 590 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 CENPOQ9BU64 300 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 NTMQ9P121 344 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 PRSS50Q9UI38 385 aa8.21□□□□□ -1.1
VPS39-205ENST00000562258 FAM221AA4D161 298 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 HSPB2A8KAH6 182 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 GCM2O75603 506 aaPredicted RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 SLC34A2O95436 690 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 CLEC2LP0C7M8 214 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 UBCP0CG48 685 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 CA6P23280 308 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 PRSS3P35030 304 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 HAAOP46952 286 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 TGM4P49221 684 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 SNRPGP62308 76 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 SLC17A1Q14916 467 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 HSPB2Q16082 182 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 ZMAT1Q5H9K5 638 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 THOC7Q6I9Y2 204 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 ADAM5Q6NVV9 412 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 SLC25A26Q70HW3 274 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 GALNT11Q8NCW6 608 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 OR51F2Q8NH61 342 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 EMG1Q92979 244 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 TMEM59Q9BXS4 323 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 METTL9Q9H1A3 318 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 ABCG5Q9H222 651 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 ZNF639Q9UID6 485 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 ZNF175Q9Y473 711 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 UNC80Q8N2C7 3258 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 B4DXG7 233 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 PRSS44E7EML9 344 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 NRASP01111 189 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 PRKACBP22694 351 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 SNRPD2P62316 118 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 PLGLAQ15195 96 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 TBRG1Q3YBR2 411 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 BHLHA15Q7RTS1 189 aaPredicted RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 NFAM1Q8NET5 270 aaPredicted RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 SYNPRQ8TBG9 265 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 PBOV1Q9GZY1 135 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 ESRP2Q9H6T0 727 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 PTTG2Q9NZH5 202 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 AQP7P3A6NL99 342 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 NME2P1O60361 137 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 CBFA2T3O75081 653 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 GLSO94925 669 aaPredicted RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 DIRAS3O95661 229 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 HOXB9P17482 250 aaPredicted RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 NME2P22392 152 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 PTAFRP25105 342 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 SMCO1Q147U7 214 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 PPA1Q15181 289 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 CREB3L2Q70SY1 520 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 BTLAQ7Z6A9 289 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 OR52H1Q8NGJ2 320 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 UBALD1Q8TB05 177 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 CCDC107Q8WV48 283 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms