RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TPD52L3Q96J77 140 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 ZNF570Q96NI8 536 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 OR8B2Q96RD0 313 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 HDHD2Q9H0R4 259 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 SYT4Q9H2B2 425 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 BEX1Q9HBH7 125 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 SAR1AQ9NR31 198 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 LHFPL6Q9Y693 200 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 POMT1Q9Y6A1 747 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 LRRC30A6NM36 301 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 HMGB1P1B2RPK0 211 aaPredicted RBP13.66□□□□□ -0.22
CLN3-208ENST00000561505 C22orf46C9J442 243 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 F5H5P2 479 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 SLC16A7O60669 478 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 ZNF205O95201 554 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 OMGP23515 440 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 RPL4P36578 427 aaKnown RBP13.66□□□□□ -0.22
CLN3-208ENST00000561505 CD200P41217 278 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 YAP1P46937 504 aaKnown RBP13.66□□□□□ -0.22
CLN3-208ENST00000561505 COX10Q12887 443 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 KRR1Q13601 381 aaKnown RBP13.66□□□□□ -0.22
CLN3-208ENST00000561505 CLEC12AQ5QGZ9 265 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 FAM201AQ5SY85 155 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 OLFML2AQ68BL7 652 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 PGM2L1Q6PCE3 622 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 LYPD2Q6UXB3 125 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 ZNF730Q6ZMV8 503 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 PTCHD4Q6ZW05 846 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 CBLL1Q75N03 491 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 NLRC3Q7RTR2 1065 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 MOGAT3Q86VF5 341 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 GJC3Q8NFK1 279 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 SLC7A13Q8TCU3 470 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 FAM71F1Q96KD3 344 aaPredicted RBP13.66□□□□□ -0.22
CLN3-208ENST00000561505 CDADC1Q9BWV3 514 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 NUAK2Q9H093 628 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 GID8Q9NWU2 228 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 CMTM6Q9NX76 183 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 PTTG3PQ9NZH4 202 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 ARMCX1Q9P291 453 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 CLN8Q9UBY8 286 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 TMEM5Q9Y2B1 443 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 AP3M1Q9Y2T2 418 aa13.66□□□□□ -0.22
CLN3-208ENST00000561505 IMPA2O14732 288 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 NDUFB2O95178 105 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 PPP1R3DO95685 299 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 KNG1P01042 644 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 LIPFP07098 398 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 SELEP16581 610 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 GPR4P46093 362 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 NPY4RP50391 375 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 RAG2P55895 527 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 KRTAP10-3P60369 221 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 FGF12P61328 243 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 SRSF4Q08170 494 aaKnown RBP13.65□□□□□ -0.22
CLN3-208ENST00000561505 MAPRE2Q15555 327 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 C11orf91Q3C1V1 193 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 C1orf94Q6P1W5 598 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 BRD3OSQ6XYD6 125 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 SLC15A3Q8IY34 581 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 KIR3DL3Q8N743 410 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 TMEM120AQ9BXJ8 343 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 CHIAQ9BZP6 476 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 TMEM100Q9NV29 134 aa13.65□□□□□ -0.22
CLN3-208ENST00000561505 IGLV1-36A0A0B4J1U3 117 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 A0A1W2PRQ8 180 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 CLPSL1A2RUU4 121 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 P2RY10O00398 339 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 DCTN6O00399 190 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 ENSAO43768 121 aaKnown RBP13.64□□□□□ -0.23
CLN3-208ENST00000561505 MELTFP08582 738 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 FPR3P25089 353 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 CDKN2AP42771 156 aaKnown RBP13.64□□□□□ -0.23
CLN3-208ENST00000561505 OMPP47874 163 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 DGCR6Q14129 220 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 GK2Q14410 553 aaPredicted RBP13.64□□□□□ -0.23
CLN3-208ENST00000561505 IFI44LQ53G44 452 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 OTPQ5XKR4 325 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 TBX15Q96SF7 602 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 FUZQ9BT04 418 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 MMP27Q9H306 513 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 ENPP4Q9Y6X5 453 aa13.64□□□□□ -0.23
CLN3-208ENST00000561505 CENPVL3A0A0U1RRI6 287 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 ZNF879B4DU55 563 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 SLC22A2O15244 555 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 CLPXO76031 633 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 ACSM4P0C7M7 580 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 CFHR2P36980 270 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 GPR157Q5UAW9 335 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 ASPHD2Q6ICH7 369 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 C8orf82Q6P1X6 216 aaPredicted RBP13.63□□□□□ -0.23
CLN3-208ENST00000561505 FIP1L1Q6UN15 594 aaKnown RBP13.63□□□□□ -0.23
CLN3-208ENST00000561505 DPY19L2P2Q6ZN68 376 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 PLPP7Q8NBV4 271 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 SLC26A10Q8NG04 563 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 NDEL1Q9GZM8 345 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 GMPR2Q9P2T1 348 aaKnown RBP13.63□□□□□ -0.23
CLN3-208ENST00000561505 CTSZQ9UBR2 303 aa13.63□□□□□ -0.23
CLN3-208ENST00000561505 LOC100653049A0A140TA62 436 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 KRT34O76011 436 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms