RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ASB18Q6ZVZ8 466 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 CHMP1BQ7LBR1 199 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 PRSS48Q7RTY5 328 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 SCCPDHQ8NBX0 429 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 OR51A7Q8NH64 312 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 SLAMF9Q96A28 289 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 TMEM186Q96B77 213 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A36Q96CQ1 311 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 DAZAP1Q96EP5 407 aaKnown RBP4.53□□□□□ -1.68
LDLR-209ENST00000558528 TMEM80Q96HE8 168 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 LRR1Q96L50 414 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 ERMAPQ96PL5 475 aaPredicted RBP4.53□□□□□ -1.68
LDLR-209ENST00000558528 IL4I1Q96RQ9 567 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 GPA33Q99795 319 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 COPS4Q9BT78 406 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 SF3B5Q9BWJ5 86 aaKnown RBP4.53□□□□□ -1.68
LDLR-209ENST00000558528 OR2B2Q9GZK3 357 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 CCDC90BQ9GZT6 254 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 WNT5BQ9H1J7 359 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 DUSP21Q9H596 190 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 EGLN3Q9H6Z9 239 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 ACKR4Q9NPB9 350 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 INPP5EQ9NRR6 644 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 INIPQ9NRY2 104 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 ANKRD10Q9NXR5 420 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 ZNF226Q9NYT6 803 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 PSORS1C1Q9UIG5 152 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 RNF6Q9Y252 685 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 RASD1Q9Y272 281 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 VDAC3Q9Y277 283 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 ERGIC3Q9Y282 383 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 EXOSC1Q9Y3B2 195 aaKnown RBP4.53□□□□□ -1.68
LDLR-209ENST00000558528 NBEAL1Q6ZS30 2694 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 CABIN1Q9Y6J0 2220 aa4.53□□□□□ -1.68
LDLR-209ENST00000558528 MDC1Q14676 2089 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 ARID1BQ8NFD5 2236 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 CSMD2Q7Z408 3487 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 IGKV1D-42A0A075B6H8 117 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 A0A0A0MQY5 61 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SMIM30A4D0T7 59 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CGB1A6NKQ9 187 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ZNF726A6NNF4 738 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 VWC2LB2RUY7 222 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 H7C1Q1 480 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SULT2B1O00204 365 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 PLPP3O14495 311 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ADAM10O14672 748 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 PHYHO14832 338 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 RNF13O43567 381 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 GMFGO60234 142 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ZIC3O60481 467 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 RAD51DO75771 328 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 NEURL1O76050 574 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SPDEFO95238 335 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 IGHMP01871 453 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CRYABP02511 175 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 CDK1P06493 297 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 DANCRP0C864 163 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SFTPCP11686 197 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ZNF43P17038 809 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 DNASE1P24855 282 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CRABP1P29762 137 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 GRPRP30550 384 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 HTR1FP30939 366 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 WNT5AP41221 380 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SLC25A1P53007 311 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CDH11P55287 796 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CARD18P57730 90 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR2B6P58173 313 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 RPL27P61353 136 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 RPS4XP62701 263 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 PPIAP62937 165 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 ACTC1P68032 377 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ACTA1P68133 377 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SLC35A2P78381 396 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 HSF2Q03933 536 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 EGR4Q05215 589 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 PUDPQ08623 228 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 MRPL28Q13084 256 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR7A5Q15622 319 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 TOMM34Q15785 309 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 TMEM176BQ3YBM2 270 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 ESCO2Q56NI9 601 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CLEC12AQ5QGZ9 265 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 TMEM236Q5W0B7 351 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SIGIRRQ6IA17 410 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SPINK14Q6IE38 97 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ARSKQ6UWY0 536 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 NHLRC1Q6VVB1 395 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 TMPRSS11AQ6ZMR5 421 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 MEPCEQ7L2J0 689 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 GPR141Q7Z602 305 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 VASH2Q86V25 355 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 BATF2Q8N1L9 274 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ARIH2OSQ8N7S6 290 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ZFP62Q8NB50 900 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 UXS1Q8NBZ7 420 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 MDS2Q8NDY4 140 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 FDCSPQ8NFU4 85 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR2M7Q8NG81 312 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms