RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	DBH	P09172	617 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	PCSK6	P29122	969 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	C21orf33	P30042	268 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	PRKX	P51817	358 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	GBX2	P52951	348 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	RPS23	P62266	143 aa	Known RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	MALL	Q13021	153 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	TP53I3	Q53FA7	332 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	SP5	Q6BEB4	398 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	ADAM5	Q6NVV9	412 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	MYPOP	Q86VE0	399 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	C1orf174	Q8IYL3	243 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	ACBD4	Q8NC06	268 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	OR52H1	Q8NGJ2	320 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	OR5L1	Q8NGL2	311 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	OR52N1	Q8NH53	320 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	ABHD4	Q8TB40	342 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	SLC7A6	Q92536	515 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	PSMG3-AS1	Q96PY0	264 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	CDCA4	Q9BXL8	241 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	BCL2L14	Q9BZR8	327 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	MOB1A	Q9H8S9	216 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	PLEKHB1	Q9UF11	243 aa	Predicted RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	MRM2	Q9UI43	246 aa	Known RBP	10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	DOPEY1	Q5JWR5	2465 aa		10.84	□□□□□ -0.67
ABCD4-223	ENST00000555904	ALPK2	Q86TB3	2170 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	DPRX	A6NFQ7	191 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904		A6NNC1	897 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	VSTM5	A8MXK1	200 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	DEFB108A	A8MXU0	73 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	ATP6V1G2-DDX39B	F2Z307	99 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	LOC110117498-PIK3R3	F6TDL0	507 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	LCAT	P04180	440 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	ACSM4	P0C7M7	580 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	FAM157B	P0CG42	384 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	LIMS3	P0CW19	117 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	LIMS4	P0CW20	117 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF35	P13682	527 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	OTX1	P32242	354 aa	Predicted RBP	10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR12D2	P58182	307 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF121	P58317	390 aa	Predicted RBP	10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	MVK	Q03426	396 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	SPOCK1	Q08629	439 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	SNTB2	Q13425	540 aa	Known RBP	10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	DAZAP2	Q15038	168 aa	Predicted RBP	10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	BCL2L15	Q5TBC7	163 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	LIPN	Q5VXI9	398 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	RNLS	Q5VYX0	342 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	PGAM5	Q96HS1	289 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR51B6	Q9H340	312 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	VCX3A	Q9NNX9	186 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	BRD7	Q9NPI1	651 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	TRIM36	Q9NQ86	728 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	ACOXL	Q9NUZ1	547 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	TBCCD1	Q9NVR7	557 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	N6AMT1	Q9Y5N5	214 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	ATP23	Q9Y6H3	246 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904		R4GMQ9	66 aa		10.83	□□□□□ -0.68
ABCD4-223	ENST00000555904	TENM4	Q6N022	2769 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	ACOD1	A6NK06	481 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	PRR32	B1ATL7	298 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	MAGEB4	O15481	346 aa	Predicted RBP	10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	TBX1	O43435	398 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	ICMT	O60725	284 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	SMPD2	O60906	423 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	MT-ND2	P03891	347 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	LCK	P06239	509 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	HTR1A	P08908	422 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	NR4A1	P22736	598 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	TUBG1	P23258	451 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	CALCR	P30988	508 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	MMP16	P51512	607 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	UCP2	P55851	309 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	WNT4	P56705	351 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	TAS2R43	P59537	309 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	MED22	Q15528	200 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	KRTAP27-1	Q3LI81	207 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF684	Q5T5D7	378 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR2G6	Q5TZ20	316 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF773	Q6PK81	442 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	FAM57B	Q71RH2	274 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	COMMD2	Q86X83	199 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	PAQR4	Q8N4S7	273 aa	Predicted RBP	10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	NUP37	Q8NFH4	326 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR1J1	Q8NGS3	322 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	SPRYD4	Q8WW59	207 aa	Predicted RBP	10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	SGCD	Q92629	289 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	C1QTNF5	Q9BXJ0	243 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR10A2	Q9H208	303 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	ISG20L2	Q9H9L3	353 aa	Known RBP	10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	TUBG2	Q9NRH3	451 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	CLEC2D	Q9UHP7	191 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	HCFC1	P51610	2035 aa		10.82	□□□□□ -0.68
ABCD4-223	ENST00000555904	SLC2A1	P11166	492 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	CFL1	P23528	166 aa	Known RBP	10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	WNT5A	P41221	380 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	SELENOV	P59797	346 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	PPP1CB	P62140	327 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms