RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 TAF13Q15543 124 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 LIPKQ5VXJ0 399 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 KLHL24Q6TFL4 600 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ZNF813Q6ZN06 617 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 GDPGP1Q6ZNW5 385 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.64□□□□□ -0.39
SHMT2-208ENST00000553868 DPPA2Q7Z7J5 298 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 LINC00346Q8IVM7 164 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 GCNT2Q8N0V5 402 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 SLC22A24Q8N4F4 322 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ST7LQ8TDW4 575 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 RNF133Q8WVZ7 376 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ISOC1Q96CN7 298 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 SLAMF6Q96DU3 332 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 COQ7Q99807 217 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ZNF416Q9BWM5 594 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 NIPAL2Q9H841 368 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ELOVL3Q9HB03 270 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 CENPMQ9NSP4 180 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ACOXLQ9NUZ1 547 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 BEX4Q9NWD9 120 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-208ENST00000553868 SLCO1C1Q9NYB5 712 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 ASH2LQ9UBL3 628 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 MRM2Q9UI43 246 aaKnown RBP12.64□□□□□ -0.39
SHMT2-208ENST00000553868 LHFPL6Q9Y693 200 aa12.64□□□□□ -0.39
SHMT2-208ENST00000553868 A0A0G2JNJ9 132 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 OGG1O15527 345 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 AIREO43918 545 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 ABHD16AO95870 558 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 CD1AP06126 327 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 CELP19835 753 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 EDNRAP25101 427 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 DCTDP32321 178 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 KIR2DL2P43627 348 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-208ENST00000553868 ARF1P84077 181 aaKnown RBP12.63□□□□□ -0.39
SHMT2-208ENST00000553868 ENDOGQ14249 297 aaKnown RBP12.63□□□□□ -0.39
SHMT2-208ENST00000553868 SSX1Q16384 188 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 LIPNQ5VXI9 398 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 RTL6Q6ICC9 239 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 LRRN1Q6UXK5 716 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 TFAP2EQ6VUC0 442 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 ZNF627Q7L945 461 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 LINGO2Q7L985 606 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 DOK1Q99704 481 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 Q9UFV3 132 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 STUB1Q9UNE7 303 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 SSR3Q9UNL2 185 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 PROCRQ9UNN8 238 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 FAM215AQ9Y5M1 114 aa12.63□□□□□ -0.39
SHMT2-208ENST00000553868 TRBV2A0A0J9YWF9 115 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 PSMD9O00233 223 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 SLC22A1O15245 554 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 PLPP2O43688 288 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 GPRIN2O60269 458 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 LALBAP00709 142 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 APOC1P02654 83 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 HLA-DPB1P04440 258 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 PSKH1P11801 424 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 B4GALT1P15291 398 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 GALP22466 123 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 GADD45AP24522 165 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 HSD11B1P28845 292 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 OPRL1P41146 370 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 GTF2A1P52655 376 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-208ENST00000553868 GRB2P62993 217 aaKnown RBP12.62□□□□□ -0.39
SHMT2-208ENST00000553868 ECH1Q13011 328 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 CDK5R1Q15078 307 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 ZNF829Q3KNS6 432 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-208ENST00000553868 SLC36A2Q495M3 483 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 FOXB2Q5VYV0 432 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 OTPQ5XKR4 325 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 DMKNQ6E0U4 476 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-208ENST00000553868 FDX2Q6P4F2 183 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 ANKRD16Q6P6B7 361 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 CORO6Q6QEF8 472 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 ARL9Q6T311 187 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 Q6ZT83 130 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 SLC16A14Q7RTX9 510 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 LRRC18Q8N456 261 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 MS4A15Q8N5U1 240 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 SMIM19Q96E16 107 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 ZNF837Q96EG3 531 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-208ENST00000553868 AMELYQ99218 206 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 SFXN3Q9BWM7 321 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 PLSCR4Q9NRQ2 329 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 PRSS50Q9UI38 385 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 LRP12Q9Y561 859 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 TIMM10BQ9Y5J6 103 aa12.62□□□□□ -0.39
SHMT2-208ENST00000553868 PNMA8CA0A1B0GUJ8 204 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 A0A1W2PPR1 153 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 PRR32B1ATL7 298 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 E9PI62 339 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 MAGEB4O15481 346 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-208ENST00000553868 RPP14O95059 124 aaKnown RBP12.61□□□□□ -0.39
SHMT2-208ENST00000553868 SERPINA3P01011 423 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 GLI4P10075 376 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 CTSSP25774 331 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 CEACAM8P31997 349 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-208ENST00000553868 CCR9P51686 369 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 HIST1H3AP68431 136 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms