RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 MAGEA5P43359 124 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 PRKXP51817 358 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 ZNF121P58317 390 aaPredicted RBP23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 MRPS10P82664 201 aaKnown RBP23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 SLC36A2Q495M3 483 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 FAM27BQ5VT28 67 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 IZUMO1Q8IYV9 350 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 NKAIN3Q8N8D7 197 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 CPT1CQ8TCG5 803 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 HPS1Q92902 700 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 PLEKHA1Q9HB21 404 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 SLC17A5Q9NRA2 495 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 A0A1B0GTI1 187 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 ITGA5P08648 1049 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 CELA3AP09093 270 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 CX3CR1P49238 355 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 CLDN18P56856 261 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 BCL2A1Q16548 175 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 MEIOBQ8N635 442 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 ZNF283Q8N7M2 679 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 HAS2Q92819 552 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 ZNF775Q96BV0 537 aaPredicted RBP23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 FOXRED1Q96CU9 486 aaPredicted RBP23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 ZNF845Q96IR2 970 aaPredicted RBP23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 C7orf50Q9BRJ6 194 aaKnown RBP23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 CACNG2Q9Y698 323 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 WDFY3Q8IZQ1 3526 aa23.21■■□□□ 1.31
CCDC88C-205ENST00000553403 IGKV3D-15A0A087WSY6 115 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 LOC100289279A0A1B0GTE1 492 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 A6NL46 340 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 CD3GP09693 182 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF708P17019 499 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 NTF4P34130 210 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 RIPPLY2Q5TAB7 128 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 LINGO2Q7L985 606 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 AKAP14Q86UN6 197 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 SERPINA12Q8IW75 414 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 GPR137CQ8N3F9 429 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 PLPP7Q8NBV4 271 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 OR6M1Q8NGM8 313 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 SLC25A28Q96A46 364 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 FAM3DQ96BQ1 224 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 FGGYQ96C11 551 aa23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 PAQR5Q9NXK6 330 aaPredicted RBP23.2■■□□□ 1.3
CCDC88C-205ENST00000553403 LOC390937A0A1W2PQ73 354 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 MEIOCA2RUB1 952 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 TFECO14948 347 aaPredicted RBP23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 LMX1BO60663 402 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 DDOSTP39656 456 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 PTH2RP49190 550 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 TMEM69Q5SWH9 247 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 PRSS45Q7RTY3 260 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 VASH2Q86V25 355 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 TOMM5Q8N4H5 51 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 ZFP62Q8NB50 900 aaPredicted RBP23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 OR51D1Q8NGF3 324 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 OR8B12Q8NGG6 310 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 SCMH1Q96GD3 660 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 SLC6A15Q9H2J7 730 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 CENPXA8MT69 81 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 GABARAPH6UMI1 98 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 CCL1P22362 96 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 CDK2P24941 298 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 POU3F4P49335 361 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 CD300CQ08708 224 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 CARTPTQ16568 116 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 C2orf76Q3KRA6 126 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 CCDC92Q53HC0 331 aaPredicted RBP23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 ELFN2Q5R3F8 820 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 C1orf100Q5SVJ3 147 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 OR51A2Q8NGJ7 313 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 OR51E1Q8TCB6 317 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 ACKR4Q9NPB9 350 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 NLKQ9UBE8 527 aa23.19■■□□□ 1.3
CCDC88C-205ENST00000553403 PHF3Q92576 2039 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 CST2P09228 141 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 HTR2CP28335 458 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 SLC6A1P30531 599 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 PPIAP62937 165 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 ANKRD16Q6P6B7 361 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 KRT74Q7RTS7 529 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 TMPRSS7Q7RTY8 843 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 OR1J2Q8NGS2 313 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF552Q9H707 407 aaPredicted RBP23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 TMEM38BQ9NVV0 291 aa23.18■■□□□ 1.3
CCDC88C-205ENST00000553403 XRCC3O43542 346 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 SYNGR4O95473 234 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 APOC1P02654 83 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 TAS2R20P59543 309 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 SPOCK1Q08629 439 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 DYRK1AQ13627 763 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 RSBN1Q5VWQ0 802 aaPredicted RBP23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 LYPD6Q86Y78 171 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 LRRC18Q8N456 261 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 ABHD3Q8WU67 409 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF837Q96EG3 531 aaPredicted RBP23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 MARVELD1Q9BSK0 173 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 CRLF2Q9HC73 371 aa23.17■■□□□ 1.3
CCDC88C-205ENST00000553403 NKX2-8O15522 239 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 KRT33AO76009 404 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms