RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SLC2A1P11166 492 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 GNB3P16520 340 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CRABP1P29762 137 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 GNALP38405 381 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CD96P40200 585 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 LUMP51884 338 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CAPZA1P52907 286 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 DCAF7P61962 342 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 HSD11B2P80365 405 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 INPP5JQ15735 1006 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF260Q3ZCT1 412 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 C14orf28Q4W4Y0 310 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ELP2Q6IA86 826 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 JMJD6Q6NYC1 403 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF584Q8IVC4 421 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 FAM219AQ8IW50 185 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ADAD2Q8NCV1 583 aaKnown RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 TSTD1Q8NFU3 115 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 OR10S1Q8NGN2 331 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 OR10K1Q8NGX5 313 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 LHFPL5Q8TAF8 219 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CASTOR1Q8WTX7 329 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CCDC107Q8WV48 283 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 OIT3Q8WWZ8 545 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ZDHHC12Q96GR4 267 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 SLC25A21Q9BQT8 299 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 PDCD10Q9BUL8 212 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 C12orf4Q9NQ89 552 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 UPB1Q9UBR1 384 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 SESN1Q9Y6P5 492 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 SDK2Q58EX2 2172 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 IGHV1OR21-1A0A087WYE8 117 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 LOC390937A0A1W2PQ73 354 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 RNF222A6NCQ9 220 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 NPIPA5E9PKD4 350 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 SULT1C2O00338 296 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 EFNA2O43921 213 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF217O75362 1048 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ISG15P05161 165 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 DCNP07585 359 aaKnown RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 MELTFP08582 738 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 H2BFMP0C1H6 154 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 VSIG8P0DPA2 414 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CD37P11049 281 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 CSNK1EP49674 416 aaKnown RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 RNF4P78317 190 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 SSBP1Q04837 148 aaKnown RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 FOXF1Q12946 379 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 BAMBIQ13145 260 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 C1orf100Q5SVJ3 147 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF813Q6ZN06 617 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 OR52H1Q8NGJ2 320 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 OR13C9Q8NGT0 318 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 PPP1R1CQ8WVI7 109 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 C11orf40Q8WZ69 217 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 AQP3Q92482 292 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 THRSPQ92748 146 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 ZBTB8AQ96BR9 441 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 KCNK17Q96T54 332 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 VRK1Q99986 396 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-213ENST00000552720 EDEM2Q9BV94 578 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 UCK1Q9HA47 277 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 FN3KRPQ9HA64 309 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 SLC22A11Q9NSA0 550 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 NPIPA1Q9UND3 350 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 PRELID1Q9Y255 219 aa6.68□□□□□ -1.34
LIMA1-213ENST00000552720 A0A1W2PP11 408 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 OR2AT4A6NND4 320 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 KRBOX1C9JBD0 128 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 ATP6V1G2-DDX39BF2Z307 99 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 LMO7DNF2Z398 122 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 CD8AP01732 235 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 ZBTB25P24278 435 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 CD27P26842 260 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 HRH1P35367 487 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 BIDP55957 195 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 HSF1Q00613 529 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TLE3Q04726 772 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 MFAP5Q13361 173 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TDGQ13569 410 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TOMM20Q15388 145 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 RNASE10Q5GAN6 216 aaKnown RBP6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TFAP2EQ6VUC0 442 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TMPPEQ6ZT21 453 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 KCTD9Q7L273 389 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 HSD17B13Q7Z5P4 300 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-213ENST00000552720 SLC38A9Q8NBW4 561 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF248Q8NDW4 579 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 PXT1Q8NFP0 134 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 SLAMF6Q96DU3 332 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 C5orf34Q96MH7 638 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 SELENOIQ9C0D9 397 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 SCPEP1Q9HB40 452 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 BARX1Q9HBU1 254 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-213ENST00000552720 FAM206AQ9NX38 181 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 PRR13Q9NZ81 148 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TNFSF18Q9UNG2 199 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 KCNK7Q9Y2U2 307 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TNRC18O15417 2968 aaPredicted RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms