RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 EGFL6Q8IUX8 553 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 OR5AS1Q8N127 324 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 KLHL36Q8N4N3 616 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SPICQ8N5J4 248 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SIGLECL1Q8N7X8 197 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 ATG16L2Q8NAA4 619 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 CCDC197Q8NCU1 140 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 OR1F12Q8NHA8 337 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SGMS2Q8NHU3 365 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SLC7A13Q8TCU3 470 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 POP5Q969H6 163 aaKnown RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 ZMYND19Q96E35 227 aaPredicted RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 FAM46AQ96IP4 442 aaKnown RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 ZNF48Q96MX3 618 aaPredicted RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 FAM210AQ96ND0 272 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 DUX5Q96PT3 197 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 OR2V2Q96R30 315 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 NUAK2Q9H093 628 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SYT4Q9H2B2 425 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 NTN4Q9HB63 628 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 NRIP3Q9NQ35 241 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 DDX28Q9NUL7 540 aaKnown RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 PTTG3PQ9NZH4 202 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 ASH2LQ9UBL3 628 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 IL19Q9UHD0 177 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 IL20RAQ9UHF4 553 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 NUP50Q9UKX7 468 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 PPP1R3CQ9UQK1 317 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SIGLEC7Q9Y286 467 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 INSIG2Q9Y5U4 225 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 AUP1Q9Y679 476 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 ENPP4Q9Y6X5 453 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 ANK2Q01484 3957 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 OR6C6A6NF89 314 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 CEACAM18A8MTB9 384 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 A8MXK9 166 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 H0YL77 283 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 SOCS2O14508 198 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 SLC22A2O15244 555 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 ZNF205O95201 554 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 H1F0P07305 194 aaKnown RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 WNT2P09544 360 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 HKR1P10072 659 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 RAC2P15153 192 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 SDHAP31040 664 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 MDH2P40926 338 aaKnown RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 CDKN2AP42771 156 aaKnown RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 OMPP47874 163 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 FXYD6P3P58550 94 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 LSM6P62312 80 aaKnown RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 GUCY1A3Q02108 690 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 PAX8Q06710 450 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 DBPQ10586 325 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 SEC23BQ15437 767 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 MEP1BQ16820 701 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 RSPO1Q2MKA7 263 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 GPR139Q6DWJ6 353 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 OR2T2Q6IF00 324 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 PTCHD4Q6ZW05 846 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 DOK3Q7L591 496 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 GLB1L2Q8IW92 636 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 ZNF420Q8TAQ5 688 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 FAM162AQ96A26 154 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 C1orf147Q96MC9 270 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 TSSK2Q96PF2 358 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 GPX7Q96SL4 187 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 GPA33Q99795 319 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 HOPXQ9BPY8 73 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 ANKRD19PQ9H560 264 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 TMEM165Q9HC07 324 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 GCM1Q9NP62 436 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 VSX1Q9NZR4 365 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 NDUFAF4Q9P032 175 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 TMEM5Q9Y2B1 443 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 PCDHGB1Q9Y5G3 927 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 IER3IP1Q9Y5U9 82 aa7.1□□□□□ -1.27
USP28-215ENST00000545608 SOX21Q9Y651 276 aaPredicted RBP7.1□□□□□ -1.27
USP28-215ENST00000545608 IGHV3OR16-10A0A075B7F0 116 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 TRBV4-1A0A0J9YWV2 114 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 IGHV3-64DA0A0J9YX35 117 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 A0A1W2PRQ8 180 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 DCTN6O00399 190 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 SURF4O15260 269 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 DIRAS1O95057 198 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 ATP6V1G2O95670 118 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 TXNDC12O95881 172 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 CYB5R3P00387 301 aaPredicted RBP7.09□□□□□ -1.27
USP28-215ENST00000545608 PRTN3P24158 256 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 CD80P33681 288 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 PMELP40967 661 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 CENPAP49450 140 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 HIST1H3AP68431 136 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 PAX2Q02962 417 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 DGCR6Q14129 220 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 KCNMB1Q16558 191 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 ESCO2Q56NI9 601 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 ARMCX4Q5H9R4 360 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 FGD3Q5JSP0 725 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 FAM201AQ5SY85 155 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms