RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZNF431Q8TF32 576 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 THAP3Q8WTV1 239 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 TMEM54Q969K7 222 aa8.77□□□□□ -1
SS18-205ENST00000542420 PNPLA2Q96AD5 504 aa8.77□□□□□ -1
SS18-205ENST00000542420 SLC25A21Q9BQT8 299 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 ULBP3Q9BZM4 244 aa8.77□□□□□ -1
SS18-205ENST00000542420 DLL4Q9NR61 685 aa8.77□□□□□ -1
SS18-205ENST00000542420 KLK11Q9UBX7 282 aa8.77□□□□□ -1
SS18-205ENST00000542420 COLQQ9Y215 455 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 ZNF175Q9Y473 711 aa8.77□□□□□ -1
SS18-205ENST00000542420 EML6Q6ZMW3 1958 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 A0A087WV48 116 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 TUBAL3A6NHL2 446 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 ZNF726A6NNF4 738 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 SSNA1O43805 119 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 WNT11O96014 354 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 TTRP02766 147 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 CD74P04233 296 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 ACSM4P0C7M7 580 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 LIFP15018 202 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 TBPP20226 339 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 RAP2BP61225 183 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 FMODQ06828 376 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 CAMK2DQ13557 499 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 C1orf210Q8IVY1 113 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 MAML2Q8IZL2 1156 aaPredicted RBP8.77□□□□□ -1.01
SS18-205ENST00000542420 CLEC1AQ8NC01 280 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 ZBTB44Q8NCP5 570 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 OR5D14Q8NGL3 314 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 MR1Q95460 341 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 C10orf35Q96D05 121 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 WBP1Q96G27 269 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 NPAS1Q99742 590 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 SF3B5Q9BWJ5 86 aaKnown RBP8.77□□□□□ -1.01
SS18-205ENST00000542420 PBOV1Q9GZY1 135 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 TMEM138Q9NPI0 162 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 MED29Q9NX70 200 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 ZNF222Q9UK12 451 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 SLC5A6Q9Y289 635 aa8.77□□□□□ -1.01
SS18-205ENST00000542420 PTRH2Q9Y3E5 179 aaKnown RBP8.77□□□□□ -1.01
SS18-205ENST00000542420 UBE2QL1A1L167 161 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 H3BML4 177 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 OR2A4O95047 310 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 TPOP07202 933 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 UBBP0CG47 229 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 RGS19P49795 217 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 POLR2GP62487 172 aaKnown RBP eCLIP8.76□□□□□ -1.01
SS18-205ENST00000542420 MEF2DQ14814 521 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 AANATQ16613 207 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 PCGF3Q3KNV8 242 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 LINC00303Q3SY05 128 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 RNASE12Q5GAN4 147 aaKnown RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 STPG1Q5TH74 334 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 ZNF813Q6ZN06 617 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 LILRB2Q8N423 598 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 MAFAQ8NHW3 353 aaPredicted RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 CCDC107Q8WV48 283 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 KCNE4Q8WWG9 221 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 DACT3Q96B18 629 aaPredicted RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 OR5B2Q96R09 309 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 OR2A7Q96R45 310 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 SLC2A8Q9NY64 477 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 GDF2Q9UK05 429 aaPredicted RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 FBXL2Q9UKC9 423 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 FLVCR1Q9Y5Y0 555 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HS3ST3B1Q9Y662 390 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 TRAV18A0A075B6X5 111 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 IGKV1D-43A0A0B4J1Z2 117 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 H0YC42 278 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 SULT2B1O00204 365 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 ARPC1BO15143 372 aaKnown RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 CBR3O75828 277 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 MPZL1O95297 269 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 RPS15P62841 145 aaKnown RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 RAC1P63000 192 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HIST1H3AP68431 136 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 GABREP78334 506 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HIST2H3PS2Q5TEC6 136 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 SFRP4Q6FHJ7 346 aaPredicted RBP8.76□□□□□ -1.01
SS18-205ENST00000542420 H3F3CQ6NXT2 135 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 LRFN4Q6PJG9 635 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HIST2H3AQ71DI3 136 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 SLC36A1Q7Z2H8 476 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 DTWD2Q8NBA8 298 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 UXS1Q8NBZ7 420 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 OR1M1Q8NGA1 313 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 OR4C16Q8NGL9 310 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 LOXL4Q96JB6 756 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 PIGQQ9BRB3 760 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 ATG5Q9H1Y0 275 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 PPA2Q9H2U2 334 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HEXA-AS1Q9H8Q6 139 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 GHRLQ9UBU3 117 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 GTF2A1LQ9UNN4 478 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HSPB11Q9Y547 144 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 HRH3Q9Y5N1 445 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 LHFPL6Q9Y693 200 aa8.76□□□□□ -1.01
SS18-205ENST00000542420 NSG1A0A0A6YYJ2 146 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 C2orf72A6NCS6 295 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 SYT7O43581 403 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms