RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HLXQ14774 488 aaPredicted RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 TSTQ16762 297 aaKnown RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 ACSM5Q6NUN0 579 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 FAHD1Q6P587 224 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 SHQ1Q6PI26 577 aaKnown RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 IQCF1Q8N6M8 205 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 CLDND2Q8NHS1 167 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 TEX47Q8TBZ9 253 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 NRBF2Q96F24 287 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 DUS3LQ96G46 650 aaKnown RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 MMADHCQ9H3L0 296 aaPredicted RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 MARCH7Q9H992 704 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 MSL2Q9HCI7 577 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 LOC100289279A0A1B0GTE1 492 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 TVP23AA6NH52 213 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 KIAA1324LA8MWY0 1029 aaPredicted RBP12.03□□□□□ -0.48
USP28-209ENST00000540925 GNGT2O14610 69 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 TIMM8AO60220 97 aaPredicted RBP12.03□□□□□ -0.48
USP28-209ENST00000540925 LMX1BO60663 402 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 CDC14BO60729 498 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 IFNGP01579 166 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 HLA-DQA2P01906 255 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 GYPBP06028 91 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 OSMP13725 252 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 ANXA8P13928 327 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 PRKACGP22612 351 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 ANOS1P23352 680 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 RASSF2P50749 326 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 CDH15P55291 814 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 CDK5Q00535 292 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 ZMAT1Q5H9K5 638 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 FAM166AQ6J272 317 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 USP51Q70EK9 711 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 NAA40Q86UY6 237 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 ZNF511Q8NB15 262 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 OR2AJ1Q8NGZ0 328 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 ST7LQ8TDW4 575 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 ELMOD3Q96FG2 381 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 PITX2Q99697 317 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 CDADC1Q9BWV3 514 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 DECR2Q9NUI1 292 aa12.03□□□□□ -0.48
USP28-209ENST00000540925 NBEAL1Q6ZS30 2694 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 RIIAD1A6NNX1 92 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 H3BN98 237 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 PPIHO43447 177 aaKnown RBP12.02□□□□□ -0.49
USP28-209ENST00000540925 E2F6O75461 281 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 TIPRLO75663 272 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 ZNF823P16415 610 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 ZNF3P17036 446 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 FMO3P31513 532 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 ENTPD1P49961 510 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 CCNIQ14094 377 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 GINS1Q14691 196 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 SLC27A4Q6P1M0 643 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 ASRGL1Q7L266 308 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 LINC01356Q8N9X3 169 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 OR5L1Q8NGL2 311 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 MED20Q9H944 212 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 SLC25A19Q9HC21 320 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 PTTG3PQ9NZH4 202 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 CDC42EP3Q9UKI2 254 aa12.02□□□□□ -0.49
USP28-209ENST00000540925 FAM183AA6NL82 134 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 IQCF6A8MYZ5 107 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 F5H5K5 113 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 M0R135 149 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 ZNF593O00488 134 aaPredicted RBP12.01□□□□□ -0.49
USP28-209ENST00000540925 SURF4O15260 269 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 DEAF1O75398 565 aaPredicted RBP12.01□□□□□ -0.49
USP28-209ENST00000540925 TGFAP01135 160 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 DAPP51397 102 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 BLVRAP53004 296 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 GK2Q14410 553 aaPredicted RBP12.01□□□□□ -0.49
USP28-209ENST00000540925 ATP6AP1Q15904 470 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 CHRFAM7AQ494W8 412 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 DCXRQ7Z4W1 244 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 TIGD4Q8IY51 512 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 PARP8Q8N3A8 854 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 OR8G5Q8NG78 346 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 DNAJC9Q8WXX5 260 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 ZNF799Q96GE5 643 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 MDFIQ99750 246 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 EGLN1Q9GZT9 426 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 IL19Q9UHD0 177 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 KCNS2Q9ULS6 477 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 WIPI2Q9Y4P8 454 aa12.01□□□□□ -0.49
USP28-209ENST00000540925 C5orf63A6NC05 138 aa12□□□□□ -0.49
USP28-209ENST00000540925 FAM157AC9JC47 383 aa12□□□□□ -0.49
USP28-209ENST00000540925 CLDN25C9JDP6 229 aa12□□□□□ -0.49
USP28-209ENST00000540925 MLNRO43193 412 aa12□□□□□ -0.49
USP28-209ENST00000540925 GLCEO94923 617 aa12□□□□□ -0.49
USP28-209ENST00000540925 FAM157CP0CG43 387 aa12□□□□□ -0.49
USP28-209ENST00000540925 SLC2A5P22732 501 aa12□□□□□ -0.49
USP28-209ENST00000540925 TPTEP56180 551 aa12□□□□□ -0.49
USP28-209ENST00000540925 TNFAIP6P98066 277 aaPredicted RBP12□□□□□ -0.49
USP28-209ENST00000540925 HNRNPA0Q13151 305 aaKnown RBP12□□□□□ -0.49
USP28-209ENST00000540925 HFEQ30201 348 aa12□□□□□ -0.49
USP28-209ENST00000540925 FAM120AOSQ5T036 256 aa12□□□□□ -0.49
USP28-209ENST00000540925 OR2T2Q6IF00 324 aa12□□□□□ -0.49
USP28-209ENST00000540925 ZNF283Q8N7M2 679 aa12□□□□□ -0.49
USP28-209ENST00000540925 OR2Z1Q8NG97 314 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms