RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ERI1Q8IV48 349 aaKnown RBP11.22□□□□□ -0.61
CCDC42-202ENST00000539522 ZNF101Q8IZC7 436 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 OR10H4Q8NGA5 316 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 OR13F1Q8NGS4 319 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 NANOS1Q8WY41 292 aaKnown RBP11.22□□□□□ -0.61
CCDC42-202ENST00000539522 MRPL48Q96GC5 212 aaKnown RBP11.22□□□□□ -0.61
CCDC42-202ENST00000539522 INTS14Q96SY0 518 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 YIPF3Q9GZM5 350 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 CLEC4MQ9H2X3 399 aaPredicted RBP11.22□□□□□ -0.61
CCDC42-202ENST00000539522 POFUT1Q9H488 388 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 ESRP2Q9H6T0 727 aaKnown RBP11.22□□□□□ -0.61
CCDC42-202ENST00000539522 RNF121Q9H920 327 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 SLC24A3Q9HC58 644 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 ISYNA1Q9NPH2 558 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 CAB39Q9Y376 341 aaPredicted RBP11.22□□□□□ -0.61
CCDC42-202ENST00000539522 RNF115Q9Y4L5 304 aa11.22□□□□□ -0.61
CCDC42-202ENST00000539522 ROS1P08922 2347 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 PLCE1Q9P212 2302 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 CACNA1DQ01668 2161 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 MYL12BO14950 172 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 SGCEO43556 437 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 DOK2O60496 412 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 ICMTO60725 284 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 PTHP01270 115 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 LCKP06239 509 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 CD3EP07766 207 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 SPARCP09486 303 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 STOMP27105 288 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 PSMB9P28065 219 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 ERVS71-1P61550 626 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 GALEQ14376 348 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 MED22Q15528 200 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 TIGD6Q17RP2 521 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 ZNF672Q499Z4 452 aaPredicted RBP11.21□□□□□ -0.61
CCDC42-202ENST00000539522 TMEM53Q6P2H8 277 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 SSX6Q7RTT6 188 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 DCXRQ7Z4W1 244 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 SLC35F2Q8IXU6 374 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 KLHL36Q8N4N3 616 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 SLC30A7Q8NEW0 376 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 OR10H5Q8NGA6 315 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 OR52N1Q8NH53 320 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 MGLLQ99685 303 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 ZNF649Q9BS31 505 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 WACQ9BTA9 647 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 ABHD6Q9BV23 337 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 DDX28Q9NUL7 540 aaKnown RBP11.21□□□□□ -0.61
CCDC42-202ENST00000539522 LSM2Q9Y333 95 aaKnown RBP11.21□□□□□ -0.61
CCDC42-202ENST00000539522 CEPT1Q9Y6K0 416 aa11.21□□□□□ -0.61
CCDC42-202ENST00000539522 MAGEB4O15481 346 aaPredicted RBP11.2□□□□□ -0.62
CCDC42-202ENST00000539522 GPRIN2O60269 458 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 GOSR1O95249 250 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 NGFP01138 241 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 COX5BP10606 129 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF823P16415 610 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 ALOX5APP20292 161 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 SSTR2P30874 369 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 OTX1P32242 354 aaPredicted RBP11.2□□□□□ -0.62
CCDC42-202ENST00000539522 GP2P55259 537 aaKnown RBP11.2□□□□□ -0.62
CCDC42-202ENST00000539522 WNT4P56705 351 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 PCBD1P61457 104 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 SCRN3Q0VDG4 424 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 RAB35Q15286 201 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 ARMCX4Q5H9R4 360 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 ELFN2Q5R3F8 820 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 RFPL4BQ6ZWI9 263 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 KCTD20Q7Z5Y7 419 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 PIAS4Q8N2W9 510 aaPredicted RBP11.2□□□□□ -0.62
CCDC42-202ENST00000539522 GJC3Q8NFK1 279 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 OR6N2Q8NGY6 317 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 OR1F12Q8NHA8 337 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 OTOSQ8NHW6 89 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 AKAP1Q92667 903 aaKnown RBP eCLIP11.2□□□□□ -0.62
CCDC42-202ENST00000539522 RNF166Q96A37 237 aaPredicted RBP11.2□□□□□ -0.62
CCDC42-202ENST00000539522 OR5M11Q96RB7 305 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 KCNN2Q9H2S1 579 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 NGBQ9NPG2 151 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 TMEM14AQ9Y6G1 99 aa11.2□□□□□ -0.62
CCDC42-202ENST00000539522 A0A1W2PQL4 384 aaPredicted RBP11.19□□□□□ -0.62
CCDC42-202ENST00000539522 C5orf49A4QMS7 147 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF670-ZNF695F2Z2N8 137 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF701M0R085 212 aaPredicted RBP11.19□□□□□ -0.62
CCDC42-202ENST00000539522 PHYHO14832 338 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 TMCC2O75069 709 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 CD8AP01732 235 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 DANCRP0C864 163 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 HSMCR30P0CW71 290 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 NR4A1P22736 598 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 PAX7P23759 505 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 OPRL1P41146 370 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 TMBIM6P55061 237 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ACSM1Q08AH1 577 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 MST1LQ2TV78 715 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF684Q5T5D7 378 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF322Q6U7Q0 402 aaPredicted RBP11.19□□□□□ -0.62
CCDC42-202ENST00000539522 SPATC1Q76KD6 591 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 PRSS45Q7RTY3 260 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 TMEM200AQ86VY9 491 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF454Q8N9F8 522 aa11.19□□□□□ -0.62
CCDC42-202ENST00000539522 ZNF485Q8NCK3 441 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms