RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CACNA1DQ01668 2161 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 IQCMA0A1B0GVH7 501 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 TMEM129A0AVI4 362 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 ATP6V1G2-DDX39BF2Z307 99 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 SRSF10O75494 262 aaKnown RBP13.25□□□□□ -0.29
LSM1-203ENST00000520755 CRYAAP02489 173 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 SERPINA5P05154 406 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 COX5BP10606 129 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 CCL2P13500 99 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 MYL12AP19105 171 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 EEF1B2P24534 225 aaKnown RBP13.25□□□□□ -0.29
LSM1-203ENST00000520755 MAP2K4P45985 399 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 OR12D2P58182 307 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 NAAAQ02083 359 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 ZNF679Q8IYX0 411 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 SPARTQ8N0X7 666 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 NEUROG1Q92886 237 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 POM121L2Q96KW2 1035 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 C4orf36Q96KX1 117 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 TMEM204Q9BSN7 226 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 UBTD1Q9HAC8 227 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 ELOVL3Q9HB03 270 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 POU2F3Q9UKI9 436 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 IKZF2Q9UKS7 526 aa13.25□□□□□ -0.29
LSM1-203ENST00000520755 RAI1Q7Z5J4 1906 aaPredicted RBP13.24□□□□□ -0.29
LSM1-203ENST00000520755 TRIM64CA6NLI5 447 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 SHISA9B4DS77 424 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 LALBAP00709 142 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 PCMT1P22061 227 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 STOMP27105 288 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 CALCRP30988 508 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 ACTA2P62736 377 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 ACTG2P63267 376 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 MFGE8Q08431 387 aaPredicted RBP13.24□□□□□ -0.29
LSM1-203ENST00000520755 TBCEQ15813 527 aaPredicted RBP13.24□□□□□ -0.29
LSM1-203ENST00000520755 XAF1Q6GPH4 301 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 KCTD18Q6PI47 426 aaPredicted RBP13.24□□□□□ -0.29
LSM1-203ENST00000520755 RHOUQ7L0Q8 258 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 KRT77Q7Z794 578 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 ALDH16A1Q8IZ83 802 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 SYS1Q8N2H4 156 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 KLHL36Q8N4N3 616 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 NANOGP1Q8N7R0 232 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 SLC30A7Q8NEW0 376 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 OR52N1Q8NH53 320 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 SPRYD4Q8WW59 207 aaPredicted RBP13.24□□□□□ -0.29
LSM1-203ENST00000520755 AKAP1Q92667 903 aaKnown RBP eCLIP13.24□□□□□ -0.29
LSM1-203ENST00000520755 PELI1Q96FA3 418 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 OR5M11Q96RB7 305 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 CCDC90BQ9GZT6 254 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 GNG8Q9UK08 70 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 CAB39Q9Y376 341 aaPredicted RBP13.24□□□□□ -0.29
LSM1-203ENST00000520755 ATP23Q9Y6H3 246 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 ABCA4P78363 2273 aa13.24□□□□□ -0.29
LSM1-203ENST00000520755 IGHV2OR16-5A0A0B4J2B6 119 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 C5orf63A6NC05 138 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 METTL15A6NJ78 407 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 E9PI62 339 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 MYL12BO14950 172 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 MRPS14O60783 128 aaKnown RBP13.23□□□□□ -0.29
LSM1-203ENST00000520755 SULT1C4O75897 302 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 PNPP00491 289 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 KRT8P05787 483 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 H2BFMP0C1H6 154 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 ACSM4P0C7M7 580 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 CCNOP22674 350 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 APLNRP35414 380 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 PSMA6P60900 246 aaKnown RBP13.23□□□□□ -0.29
LSM1-203ENST00000520755 GRB2P62993 217 aaKnown RBP13.23□□□□□ -0.29
LSM1-203ENST00000520755 EMX1Q04741 257 aaPredicted RBP13.23□□□□□ -0.29
LSM1-203ENST00000520755 TBC1D28Q2M2D7 210 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 LIPNQ5VXI9 398 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 DEGS2Q6QHC5 323 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 PRSS45Q7RTY3 260 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 NAA40Q86UY6 237 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 IL17RDQ8NFM7 739 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 TSPAN14Q8NG11 270 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 SNX33Q8WV41 574 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 DOK1Q99704 481 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 KCNJ15Q99712 375 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 MROQ9BYG7 248 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 CDH20Q9HBT6 801 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 ACOT13Q9NPJ3 140 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 GRIP1Q9Y3R0 1128 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 FBN2P35556 2912 aa13.23□□□□□ -0.29
LSM1-203ENST00000520755 J3QLW9 94 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 M0R135 149 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 ZNF254O75437 659 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 LCKP06239 509 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 ZNF19P17023 458 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 PSMB10P40306 273 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 WNT5AP41221 380 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 CX3CR1P49238 355 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 GDI2P50395 445 aaKnown RBP13.22□□□□□ -0.29
LSM1-203ENST00000520755 PRKXP51817 358 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 RIDAP52758 137 aaKnown RBP13.22□□□□□ -0.29
LSM1-203ENST00000520755 WNT4P56705 351 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 ECH1Q13011 328 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 ZNF672Q499Z4 452 aaPredicted RBP13.22□□□□□ -0.29
LSM1-203ENST00000520755 YIPF7Q8N8F6 280 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms