RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CYB561P49447 251 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 C21orf58P58505 322 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 FMODQ06828 376 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 ST8SIA1Q92185 356 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 ST8SIA4Q92187 359 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 ZNF2Q9BSG1 426 aaPredicted RBP11.46□□□□□ -0.57
USP53-209ENST00000514665 TINAGL1Q9GZM7 467 aaPredicted RBP11.46□□□□□ -0.57
USP53-209ENST00000514665 S1PR5Q9H228 398 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 GNG12Q9UBI6 72 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 R4GMQ9 66 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 ZNFX1Q9P2E3 1918 aaKnown RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 ATP6V1G2-DDX39BF2Z307 99 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 TGM6O95932 706 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 ZGLP1P0C6A0 271 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 CD46P15529 392 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 COL9A1P20849 921 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 RAB31Q13636 194 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 ZNF628Q5EBL2 1059 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 CD300LDQ6UXZ3 194 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 LANCL3Q6ZV70 420 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 SPRED2Q7Z698 418 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 LGI3Q8N145 548 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 OR8B4Q96RC9 309 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 C12orf49Q9H741 205 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 ADGRL4Q9HBW9 690 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 TMEM100Q9NV29 134 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 DNAJB12Q9NXW2 375 aaKnown RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 PURGQ9UJV8 347 aaKnown RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 MN1Q10571 1320 aaPredicted RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 ZNF814B7Z6K7 855 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 LMO7DNF2Z398 122 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 SLC17A2O00624 439 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 XRCC3O43542 346 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 LILRB5O75023 590 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 AVPR2P30518 371 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 CDAP32320 146 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 CD80P33681 288 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 CDKN2AP42771 156 aaKnown RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 FAM122CQ6P4D5 195 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 ACOT7LQ6ZUV0 252 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 OR51A4Q8NGJ6 313 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 PPP1R1CQ8WVI7 109 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 SEH1LQ96EE3 360 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 PHF7Q9BWX1 381 aaPredicted RBP11.46□□□□□ -0.58
USP53-209ENST00000514665 PBOV1Q9GZY1 135 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 FBXO4Q9UKT5 387 aa11.46□□□□□ -0.58
USP53-209ENST00000514665 ARPC3O15145 178 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 IFNA10P01566 189 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 CD63P08962 238 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 RNF4P78317 190 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 ZNF425Q6IV72 752 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 ADAM5Q6NVV9 412 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 SLC30A7Q8NEW0 376 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 OTOSQ8NHW6 89 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 TAAR8Q969N4 342 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 LRRC3BQ96PB8 259 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 GPA33Q99795 319 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 BCO1Q9HAY6 547 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 SLC52A3Q9NQ40 469 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 DUSP13Q9UII6 198 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 PAPPA2Q9BXP8 1791 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 IGHV5-51A0A0C4DH38 117 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 SNRPGP15A8MWD9 76 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 D6RAR5 112 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 ZNF587BE7ETH6 402 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 CXCL13O43927 109 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 NXPH2O95156 264 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 RBP2P50120 134 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 ST3GAL2Q16842 350 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 PRICKLE4Q2TBC4 344 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 WDR38Q5JTN6 314 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 HIST2H3PS2Q5TEC6 136 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 MORN4Q8NDC4 146 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 BARHL1Q9BZE3 327 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 PRMT8Q9NR22 394 aaPredicted RBP11.45□□□□□ -0.58
USP53-209ENST00000514665 QPCTLQ9NXS2 382 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 ARPC4-TTLL3A0A0A6YYG9 625 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 FRG2CA6NGY1 282 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 CLDN1O95832 211 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 RFC3P40938 356 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 IL10RAQ13651 578 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 THEM4Q5T1C6 240 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 ZBTB37Q5TC79 503 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 OR52W1Q6IF63 320 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 WDR88Q6ZMY6 472 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 MOGAT1Q96PD6 335 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 TAF9BQ9HBM6 251 aa11.45□□□□□ -0.58
USP53-209ENST00000514665 UTRNP46939 3433 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 OR2F2O95006 317 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 ZFP36L2P47974 494 aaKnown RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 HTRA4P83105 476 aaPredicted RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 OR2F1Q13607 317 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 MSMO1Q15800 293 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 PDLIM3Q53GG5 364 aaPredicted RBP11.44□□□□□ -0.58
USP53-209ENST00000514665 TOR2AQ5JU69 321 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 RABEPKQ7Z6M1 372 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 OR51F2Q8NH61 342 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 C11orf40Q8WZ69 217 aa11.44□□□□□ -0.58
USP53-209ENST00000514665 YIPF5Q969M3 257 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms