RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 GTF2A1LQ9UNN4 478 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 MYRFQ9Y2G1 1151 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 CRYBG3Q68DQ2 2970 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 A0A1W2PPR1 153 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 FAM221AA4D161 298 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 PRR32B1ATL7 298 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 E7EQL1 145 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 PTGES3LE9PB15 166 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 TBX1O43435 398 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 APOC1P02654 83 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 PRF1P14222 555 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 MYL12AP19105 171 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 THBS4P35443 961 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 ERVS71-1P61550 626 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 PPP1CBP62140 327 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 CSNK2BP67870 215 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 ZNF85Q03923 595 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 ST3GAL4Q11206 333 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 MED21Q13503 144 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 TP53I3Q53FA7 332 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 RGS7BPQ6MZT1 257 aaPredicted RBP12.91□□□□□ -0.34
NUP54-213ENST00000513352 DRAM2Q6UX65 266 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 LHFPL3Q86UP9 236 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 NAA40Q86UY6 237 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 ZNF101Q8IZC7 436 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 NUP37Q8NFH4 326 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 LILRB1Q8NHL6 650 aaPredicted RBP12.91□□□□□ -0.34
NUP54-213ENST00000513352 BCL2L14Q9BZR8 327 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 CA10Q9NS85 328 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 MRPS18AQ9NVS2 196 aaKnown RBP12.91□□□□□ -0.34
NUP54-213ENST00000513352 CHCHD3Q9NX63 227 aaKnown RBP12.91□□□□□ -0.34
NUP54-213ENST00000513352 PTTG3PQ9NZH4 202 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 PSORS1C1Q9UIG5 152 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 FZR1Q9UM11 496 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 PCDHGB5Q9Y5G0 923 aa12.91□□□□□ -0.34
NUP54-213ENST00000513352 METTL15A6NJ78 407 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 VSTM5A8MXK1 200 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 DENRO43583 198 aaKnown RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 ZNF254O75437 659 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 RPP14O95059 124 aaKnown RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 NGFP01138 241 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 DCKP27707 260 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 ZNF121P58317 390 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 ROM1Q03395 351 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 EGR3Q06889 387 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 GALEQ14376 348 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 RSPO1Q2MKA7 263 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 ZNF829Q3KNS6 432 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 PLEKHG7Q6ZR37 379 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 FAM57BQ71RH2 274 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 RHOUQ7L0Q8 258 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 FBXL14Q8N1E6 418 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 IPCEF1Q8WWN9 437 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 APOBEC3DQ96AK3 386 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 TMEM80Q96HE8 168 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 PGAM5Q96HS1 289 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 MYCBPQ99417 103 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 DOK1Q99704 481 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 DHRS9Q9BPW9 319 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 ALG8Q9BVK2 526 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 NIPAL2Q9H841 368 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 FGF20Q9NP95 211 aaPredicted RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 INPP5EQ9NRR6 644 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 PLCXD1Q9NUJ7 323 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 CNOT2Q9NZN8 540 aaKnown RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 MRM2Q9UI43 246 aaKnown RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 EXOSC1Q9Y3B2 195 aaKnown RBP12.9□□□□□ -0.34
NUP54-213ENST00000513352 TPRKBQ9Y3C4 175 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 CMAHPQ9Y471 501 aa12.9□□□□□ -0.34
NUP54-213ENST00000513352 J3QLW9 94 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 J3QRE1 110 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 IGHA1P01876 353 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 PIPP12273 146 aaPredicted RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 ZNF19P17023 458 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 EEF1B2P24534 225 aaKnown RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 GCH1P30793 250 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 OTX1P32242 354 aaPredicted RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 PSMA6P60900 246 aaKnown RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 ACTA2P62736 377 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 ACTG2P63267 376 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 NKX6-1P78426 367 aaPredicted RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 MALLQ13021 153 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 GFOD2Q3B7J2 385 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 KRTAP27-1Q3LI81 207 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 RBM48Q5RL73 367 aaKnown RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 DEGS2Q6QHC5 323 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 OR5L1Q8NGL2 311 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 SLC25A40Q8TBP6 338 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 MYDGFQ969H8 173 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 C4orf36Q96KX1 117 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 C1QTNF5Q9BXJ0 243 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 SP140LQ9H930 580 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 FAIMQ9NVQ4 179 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 TBCCD1Q9NVR7 557 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 ERVK13-1Q9NX77 482 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 BLOC1S6Q9UL45 172 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 DIMT1Q9UNQ2 313 aaKnown RBP12.89□□□□□ -0.35
NUP54-213ENST00000513352 STARD10Q9Y365 291 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 AKAP6Q13023 2319 aa12.89□□□□□ -0.35
NUP54-213ENST00000513352 CACNA1DQ01668 2161 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms