RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ASB11Q8WXH4 323 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC35B3Q9H1N7 401 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OPN3Q9H1Y3 402 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 BOKQ9UMX3 212 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PAM16Q9Y3D7 125 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 H3BVH4 76 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CBR3O75828 277 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OPN1LWP04000 364 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 NID1P14543 1247 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TGFBR1P36897 503 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 NPY4RP50391 375 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 EXOSC7Q15024 291 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 Q499Y3 187 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 MARCH8Q5T0T0 291 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OR8G2PQ6IF36 304 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TRILQ7L0X0 811 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 UBE3DQ7Z6J8 389 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CCDC190Q86UF4 302 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 MKXQ8IYA7 352 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CARFQ8N187 725 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 FAM169BQ8N8A8 192 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 MED17Q9NVC6 651 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PLEK2Q9NYT0 353 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 MYOTQ9UBF9 498 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC35A3Q9Y2D2 325 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CDK5RAP2Q96SN8 1893 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 COL5A3P25940 1745 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 FAM24AA6NFZ4 105 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TOX3O15405 576 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OPN1MWP04001 364 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OPN1MW2P0DN77 364 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OPN1MW3P0DN78 364 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 IL2RGP31785 369 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 GALR1P47211 349 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 VASPP50552 380 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CTSCP53634 463 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 HES1Q14469 280 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 OR1Q1Q15612 314 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF124Q15973 351 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 LIPIQ6XZB0 460 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC38A5Q8WUX1 472 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TEX37Q96LM6 180 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 NKX3-1Q99801 234 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 EVA1AQ9H8M9 152 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 MRPS2Q9Y399 296 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PTRH2Q9Y3E5 179 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 LINC01553A4QN01 128 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 RGRP47804 291 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 EMP1P54849 157 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ISL1P61371 349 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 OR8G1Q15617 311 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM201Q5SNT2 666 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 THNSL2Q86YJ6 484 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF485Q8NCK3 441 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 DMBX1Q8NFW5 382 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF480Q8WV37 535 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC46A1Q96NT5 459 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 PKIBQ9C010 78 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 AMBRA1Q9C0C7 1298 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 PELI2Q9HAT8 420 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 LTB4R2Q9NPC1 389 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 HEYLQ9NQ87 328 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 CROCCQ5TZA2 2017 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A087WUU8 490 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 IGKV6-21A0A0C4DH24 114 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM212A6NML5 194 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 RAB27BO00194 218 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 DOK2O60496 412 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 NAGAP17050 411 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 G6PCP35575 357 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 GPM6AP51674 278 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 YPEL5P62699 121 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 IL10RAQ13651 578 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 CST9Q5W186 159 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 LAIR1Q6GTX8 287 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ANKRD16Q6P6B7 361 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 Q6ZSR6 202 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 BPIFA4PQ86YQ2 179 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 NUDT8Q8WV74 236 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ZFYVE21Q9BQ24 234 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 B3GALT5Q9Y2C3 310 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A1W2PPH5 198 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 OLFM2O95897 454 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ITGBL1O95965 494 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 TGM1P22735 817 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 ARRB2P32121 409 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 SPCS3P61009 180 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC14A2Q15849 920 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2W3Q7Z3T1 314 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 CBLN2Q8IUK8 224 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5AU1Q8NGC0 362 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 OR52I2Q8NH67 350 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 MZB1Q8WU39 189 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 PPP1R1CQ8WVI7 109 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 HDAC8Q9BY41 377 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 DUSP21Q9H596 190 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 OR14J1Q9UGF5 321 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 hCG_1809904A0A1W2PP81 198 aa7.98□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A1W2PR64 198 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms