RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ADNP2Q6IQ32 1131 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 C12orf54Q6X4T0 127 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 CENPQQ7L2Z9 268 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 NKAIN4Q8IVV8 208 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 OR11H7Q8NGC8 314 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 OR6N1Q8NGY5 312 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 OR13G1Q8NGZ3 307 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 LYPD6BQ8NI32 183 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 NUBPLQ8TB37 319 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 APH1BQ8WW43 257 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 CAPSLQ8WWF8 208 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 RTN4IP1Q8WWV3 396 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 SLC25A46Q96AG3 418 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 ZNF717Q9BY31 904 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 FAM192AQ9GZU8 254 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 FGF23Q9GZV9 251 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 NEUROG2Q9H2A3 272 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 FBXO6Q9NRD1 293 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 NMRK1Q9NWW6 199 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 MTFP1Q9UDX5 166 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 SLC17A4Q9Y2C5 497 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 WIF1Q9Y5W5 379 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 S4R3C0 116 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 TRBV9A0A0B4J1U6 114 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 A0A1B0GW55 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 C5orf63A6NC05 138 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 H7C0C1 242 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 SCAMP2O15127 329 aaKnown RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 EIF3HO15372 352 aaKnown RBP eCLIP1.79□□□□□ -2.12
VPS50-219ENST00000495039 NVLO15381 856 aaKnown RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 RAD51CO43502 376 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 CHST1O43916 411 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 HUS1O60921 280 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 CDRT1O95170 752 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 AGTP01019 485 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 HLA-DQB1P01920 261 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 KRT14P02533 472 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DUX4L2P0CJ85 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DUX4L3P0CJ86 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DUX4L5P0CJ88 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DUX4L6P0CJ89 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DUX4L7P0CJ90 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 BCKDHBP21953 392 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 IL32P24001 234 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 GTF2E2P29084 291 aaKnown RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 RBM34P42696 430 aaKnown RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 ATP5OP48047 213 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 C21orf59P57076 290 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 TAS2R31P59538 309 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 CDK5Q00535 292 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 SEMG2Q02383 582 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 LIPEQ05469 1076 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DGCR6Q14129 220 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 LRRC66Q68CR7 880 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 UNQ9165/PRO28630Q6UXU0 137 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 FAM43BQ6ZT52 329 aaPredicted RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 MBOAT2Q6ZWT7 520 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 FAM71AQ8IYT1 594 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 SNX31Q8N9S9 440 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 OR6Q1Q8NGQ2 317 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 FAM81AQ8TBF8 368 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 CIRBP-AS1Q8TBR5 109 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 TGS1Q96RS0 853 aaKnown RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 CHP1Q99653 195 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 RBBP8Q99708 897 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 RSG1Q9BU20 258 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 ANKRD60Q9BZ19 345 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 TMEM27Q9HBJ8 222 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 TMEM165Q9HC07 324 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 NEK6Q9HC98 313 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 EXOSC4Q9NPD3 245 aaKnown RBP1.79□□□□□ -2.12
VPS50-219ENST00000495039 MED4Q9NPJ6 270 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 MTCH1Q9NZJ7 389 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 DUX4Q9UBX2 424 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 NINLQ9Y2I6 1382 aa1.79□□□□□ -2.12
VPS50-219ENST00000495039 COL22A1Q8NFW1 1626 aaPredicted RBP1.78□□□□□ -2.12
VPS50-219ENST00000495039 A0A0J9YXV3 536 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 CENPVL3A0A0U1RRI6 287 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 OR2AG2A6NM03 316 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 SYCE1LA8MT33 242 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 A8MUU9 505 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 ERLIN1O75477 346 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 FGFR1OPO95684 399 aaKnown RBP1.78□□□□□ -2.12
VPS50-219ENST00000495039 LSM8O95777 96 aaKnown RBP1.78□□□□□ -2.12
VPS50-219ENST00000495039 CD37P11049 281 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 ME2P23368 584 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 MRPL19P49406 292 aaKnown RBP1.78□□□□□ -2.12
VPS50-219ENST00000495039 CCNA1P78396 465 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 PRR3P79522 188 aaKnown RBP1.78□□□□□ -2.12
VPS50-219ENST00000495039 ZNF616Q08AN1 781 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 LRRC74AQ0VAA2 488 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 ART3Q13508 389 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 ZNF266Q14584 549 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 RCN1Q15293 331 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 ALKBH6Q3KRA9 238 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 TPTE2P1Q5T6R2 138 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 C1orf185Q5T7R7 199 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 CSGALNACT2Q8N6G5 542 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 LRRC52Q8N7C0 313 aa1.78□□□□□ -2.12
VPS50-219ENST00000495039 C11orf72Q8NBR9 251 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms